barSeed - Barley Seed Development Database

Probe CUST_40670_PI390587928

Source Contig U35_44794

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40670_PI390587928	Hv_44K_v2	TCTCTTATCCGTCTCGACCTGACATTGAGATCTTCAAGGATTTCAACCTGAAGATCCAGG	172	GeneList: lightcyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.336	1.250	2.476	1.914	0.427	0.587
Raw	23.437	36.601	60.254	80.041	4.239	8.012

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365637	4137	2e-24	3253 - 3312	100	60 / 60	plus	ABC07979 ABC16427
MLOC	MLOC_56096.2	6725	2e-24	5733 - 5792	100	60 / 60	plus	ABC07979 ABC16427
MLOC	MLOC_56096.3	4453	2e-24	3554 - 3613	100	60 / 60	plus	ABC07979 ABC16427
MLOC	MLOC_56096.1	4567	2e-24	3664 - 3723	100	60 / 60	plus	ABC07979 ABC16427
JLOC1	JLOC1_36260.1	4411	8e-25	3489 - 3548	100	60 / 60	plus
Harvest21	ABC42938	373	3e-25	173 - 232	100	60 / 60	plus
Harvest35	U35_44794	373	3e-25	173 - 232	100	60 / 60	plus

Contig Sequence (373 bp)

>U35_44794 373 Hv_44K_v2
GCCAACTCCGTGGCTGAGACGGTCAGCCTTGCGCCGGAGATCATCCGGGGAGGCGAATCT
ATTCGCTCCATCTTCGGCATCCTCAACAGGGCGACGAGGATCGAGCCTGATGATCCGGAG
GCAGAGCGTGTCACCACTGTTCGTGGCGACATTGAGCTGCGGCATGTGGACTTCTCTTAT
CCGTCTCGACCTGACATTGAGATCTTCAAGGATTTCAACCTGAAGATCCAGGCCGGGCGC
AGCCAGGCTCTGGTCGGAGCCAGTGGTTCCGGCAAGAGCACCGTCATCGCCCTCATCGAG
CGGTTCTACGACCCGACAGGCGGCAAGGTGATGATCGACGGCAAGGACATCAGGAGGCTG
AACCTCAAGTCCC

Homology of Contig U35_44794 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g38570.2	990	1e-60	protein\|multidrug resistance protein, putative, expressed
Brachypodium v1_2	Bradi5g23600.1	1267	3e-74
Arabidopsis v10	AT3G28860.1	1252	8e-60	\| Symbols: ATMDR1, ATMDR11, PGP19, MDR11, MDR1, ATPGP19, ABCB19, ATABCB19 \| ATP binding cassette subfamily B19 \| chr3:10870287-10877286 REVERSE LENGTH=1252