barSeed - Barley Seed Development Database

Probe CUST_40665_PI390587928

Source Contig U35_3701

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40665_PI390587928	Hv_44K_v2	TTTTAAGCCCGAAGATAATCATGAATCCAGTGCGTGATTTCTTCACGCGCCGATGTTGGA	1365	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251374.1	1588	2e-24	1362 - 1421	100	60 / 60	plus	ABC10053 ABC10054
MLOC	MLOC_81061.2	746	2e-24	65 - 124	100	60 / 60	minus	ABC10053 ABC10054
MLOC	MLOC_81061.1	830	2e-24	201 - 260	100	60 / 60	minus	ABC10053 ABC10054
JLOC1	JLOC1_53938.2	1009	8e-25	673 - 732	100	60 / 60	plus
JLOC1	JLOC1_53938.1	959	8e-25	623 - 682	100	60 / 60	plus
Harvest35	U35_3701	1462	3e-25	1366 - 1425	100	60 / 60	plus

Contig Sequence (1462 bp)

>U35_3701 1462 Hv_44K_v2
GTCACGGCCGCGGGAACAGGAAACCCAGCCAGGACACACTTGGAGCGAGCCACCGTTTGC
CCCTGCCCGCCGGCCACAGCCGTCTCCTGCCCCCTTCCCCACCTACGTTCTTCCCCAATC
CCTTTCTGGTGCCGTGCCCGTCCGGGAGAGAGAGAGAGGGAGAGGGAGGCGGCGATGGCG
AGGCACTTCCTGCTCAACACCGGAGCCAAGATCCCCTCGGTGGGGCTCGGCACCTGGCAG
GCCGACCCCGGCGTCGTCGGCGACGCCGTCTACGCCGCCGTCAAGGCGGGGTACCGGCAC
ATCGATTGCGCCAGAGTCTACGGCAACGAAAAGGAGATTGGTTTGGCGCTGAAGAAGCTA
TTTGAAGAGGGCGTAGTGAAGCGTGACGATCTGTTTATCACCTCGAAGCTATGGAATGAT
CATCATGCTCCTGAAGATGTGCCAGAGGCACTAAATGAAAGCCTGAATGATTTACAGCTT
GATTACTTGGATCTTTATCTTATCCATTGGCCGTTTAGAGTCAAGAAGGGAACAAACAAC
AACCCTGAAAACTTCGTTACACCTGACATACCTGCTACTTGGGGGGCAATGGAGAAGTTA
CATGATGCTGGCAAAGCTCGCGCGATTGGTGTGAGTAACTTTTCATCAAAGAAGTTGGGT
GACTTGCTTGCCGTAGCTCGTGTACCTCCAGCTGTTGATCAGGTGGAATGCCATCCTTGC
TGGCAGCAAACTAAGCTCCACAACTTTTGTCAGTCAGCTGGTGTTCATCTTAGTGCTTAC
TCGCCTCTAGGTTCACCTGGTACTACTTGGATGAACGGTAATGTCCTTAAAGAACCAATA
ATCATCTCAATATCCGAGAAACTCGGCAAGACACCTGCACAAGTGGCTCTGCGCTGGAAC
ATTCAGACGGGTCACAGCGTGCTACCAAAGAGCACGAATCAGGAAAGGATAAAGCAAAAC
CTTGATGTTCATGATTGGTCAATTCCAGATGACGTGCTTGCAAAGTTCTCGGAAATTAAG
CAGGCTAGGCTGCTCAGAGGCAACTTCGCCGTTAATCCACAGAGCGTTTACAAGACCCAC
GAGGAGCTGTGGGACAGTGAGATTTAGGAAGGCTGGCGTCGCTCATCCTGAGCAGGGAGC
AGCAAGCATACATATCAGGAACTGTCGATTCGTTTATCTCAGGATTCGCTCTTCAGAGAC
CAAGGTTCAGTGCTCTGAGCTTTGCGATTCTATCCCGTATCTCGATTCACGAACTATGTT
GTTAGCAGCTTCATTATTTATGTGGTTTTTTAGACAAAGCTTCATTATTAATGTGCCCTT
GGGGATATTGTGCCGTGGGCGTCGCGTTTTTGGTCTTCTGTTCTATTTTAAGCCCGAAGA
TAATCATGAATCCAGTGCGTGATTTCTTCACGCGCCGATGTTGGAGTGTCACCCTGTCTG
GTAGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_3701 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g62870.1	312	0.0	protein\|oxidoreductase, aldo/keto reductase family protein, putative, expressed
Brachypodium v1_2	Bradi2g54890.1	312	0.0
Arabidopsis v10	AT2G37790.1	314	2e-148	NAD(P)-linked oxidoreductase superfamily protein \| chr2:15838838-15840752 FORWARD LENGTH=314