barSeed - Barley Seed Development Database

Probe CUST_40662_PI390587928

Source Contig U35_3704

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40662_PI390587928	Hv_44K_v2	GCTTCTTAACTTAAGCGTCCTTTCAAAGTATTCCCTTCGTTTTAAAATAAATGTCGCTGT	650	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.255	0.354	0.924	1.694	1.336	1.297
Raw	38.039	83.511	188.056	524.562	149.188	161.884

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_21339.1	540	2e-24	29 - 88	100	60 / 60	minus	ABC08052
JLOC1	JLOC1_14813.1	535	4e-23	1 - 57	100	57 / 57	minus
Harvest21	ABC08052	733	3e-25	651 - 710	100	60 / 60	plus	ABC08052
Harvest35	U35_3704	733	3e-25	651 - 710	100	60 / 60	plus

Contig Sequence (733 bp)

>U35_3704 733 Hv_44K_v2
GATCCAATCCAACCCGATCCCGATCTAATCCGGTCCAGGATCGATCGTCGTGTTCCTTCC
TCGCGAAAAGCGTCGATCGGACCAGATACGCGATGGCCCCGAGCGCGTCGATGCTGTTCC
TCAGCTACCACCAGCTCCACCACGGCCCCGCCGACGCGCCGCGCGACGTGGACGGCGGCG
GCGGCGGCGGCGGCTTCAGGTTCGGCTTCGGCAACGTCTTCTTCTCCCTCGGCGTGCTGG
CGCCGAAGCGGCGGGATGCGGCGGCGACGGAGGTGCAGGACGGGAAGCAGAGGCAGAGGG
CGCGTCGGGCCGGCGGCGGGGAGGCGGAGGAGGAGCAGCCCGCGACGCTGGCGAGCAAGT
TCGACGAGGCCGTGCGGCTCAGCTGCTGGTCGTCCTGAAGCTCGTTTTAGTTCTCGGGCA
CTGTCCTGCACTAGCTTTTCCCTTCTCTTGCCAACGTTGCTTATGTATGAATCGGCGAGC
ATGTGATGCGCCGATCGGCGACGACGCACGATGTGTAGATAAAATGTGTCTGCTGTGCAT
ACGAATTTCCCTTCAGGTTTTCCTCTGTGGAATCCTGCGCACTGTTTCCTGACTTACCCG
GATCTTGATATTCGCTTGTATGTGGCCGTCGTCGCGTCCTCTCGTTGCTAGCTTCTTAAC
TTAAGCGTCCTTTCAAAGTATTCCCTTCGTTTTAAAATAAATGTCGCTGTTTTAGTAAAA
AAAAAAAAAAAAA

Homology of Contig U35_3704 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None