barSeed - Barley Seed Development Database

Probe CUST_40657_PI390587928

Source Contig U35_3709

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40657_PI390587928	Hv_44K_v2	ACTCTAGTTTCTACGTACGTTGCAGTATCAGTATGTACCATGTACTACTCACTCCGTTCC	1141	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356805	1336	2e-24	1231 - 1290	100	60 / 60	plus	ABC08039
MLOC	MLOC_71613.1	912	2e-24	66 - 125	100	60 / 60	minus	ABC08039
JLOC1	JLOC1_47608.1	885	8e-25	734 - 793	100	60 / 60	plus
Harvest21	ABC08039	1241	3e-25	1142 - 1201	100	60 / 60	plus	ABC08039
Harvest35	U35_3709	1241	3e-25	1142 - 1201	100	60 / 60	plus

Contig Sequence (1241 bp)

>U35_3709 1241 Hv_44K_v2
GCCCCACCATCACCATGGCTCAGGCTCCGGGCCGCGCCGCCTCCGCCTCCGCCGTGCGGC
TCTTCGATGCCCACTGCCACCTGCAGGACCCACGCATCGCAGCGGCCGCCCCCTCGCTCA
TTCGCGCCGCCACAGCCTCCGGCGTCGCCCGGTTCGCGGTCAACGGCACCTCCGAGAAAG
ACTGGCACCTGGTGAAGCAGATGGCCCACGAGCACCCGGCCGTCGTCCCCTGCTTCGGCC
TCCACCCATGGTGGGTGCCGGAGAGGTCGCCCGATTGGATGGATTCGCTCCGGCAGTTCT
TCTCGGAGACCCCAGAGGCGGCTGTTGGAGAGACTGGTCTGGACAAGGGATCGCATGGAA
AAACTATTGACTTTGGAGAACAGGTTGAAGTATTCCACCAGCAACTTGAACTTGCTAAGG
AATTGGAGAAACCTGTTTCTGTTCATTGTGTACGTGCCTTCGGCGATCTTCTGGAAATAC
TAAAGCGTACTGGGCCTTTTCCAGCAGGTGTGCTGTTGCATTCTTATCTGGGGTCTGCGG
AAATGGTGCCTGGCCTTGCAAATTTAGGTTGTTACTTTTCGTTGTCTGGTTTCCTTACAG
GCATGAAATCCACTAAGGCAAAGAAAATGGTCAAAGCAATACCCTTGGACAGAATTCTGT
TAGAGACAGATGCACCAGATGCAGTACCAAAGTTGGACAATGTTTCTCCAGTCACAGTCC
CTCTGGACACTTCAGATGCGGATACTGAAAAGTCTCACAGCGATTCGACCTCTCAGGCGG
CTGCCTCTTCAAACGAATCCTTGAATCATCCAGCTAACATCCACATTGTTTTGAAGTATG
TGGCATCGCTGCTTGAAATGCCAGAAGCAGAACTCGCCGAGACGAGCTACAGGAACGCCA
CCAAACTGTTCTCCTACCCTGGATCCAAGGTTCACCACGAAGCTGAAGCTGGGTGATTTG
GGGTGGGGCGGGTGGCCGTCGAACATGAACCATGCTCATCGAAATCCTGGTGCGTTCTGC
CTGATGTTGTCTGTATACTGTATGTATGTTATTGTAGTTGTATAATCGGTCTAAGACAAG
GTAGGTAGCAGTCAAAAAGAAATGAGAAAGCGGCTCATAGCTGCTATGTTGCCAAATTAT
TACTCTAGTTTCTACGTACGTTGCAGTATCAGTATGTACCATGTACTACTCACTCCGTTC
CAAAAAAAAAAAAAAAAACCATATAAAAAAAAAAAAAAAAA

Homology of Contig U35_3709 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g48820.1	312	5e-172	protein\|deoxyribonuclease tatD, putative, expressed
Brachypodium v1_2	Bradi5g19070.1	312	2e-174
Arabidopsis v10	AT5G17570.1	325	8e-122	TatD related DNase \| chr5:5792948-5794580 FORWARD LENGTH=325