barSeed - Barley Seed Development Database

Probe CUST_40637_PI390587928

Source Contig U35_3735

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40637_PI390587928	Hv_44K_v2	GCTTGTATCGTGTCGGTGAGATGTAATAGCACTTGGTCGGGTTGCCTTTGTCTCAAAAAA	948	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.347	1.557	1.198	0.853	0.311	0.373
Raw	3027.263	5527.350	3690.227	4098.313	535.061	694.152

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11173.1	1976	7e-23	26 - 86	98	60 / 61	minus	ABC08394 ABC47400
JLOC1	JLOC1_7379.3	894	4e-23	717 - 777	98	60 / 61	plus
JLOC1	JLOC1_7379.2	805	4e-23	628 - 688	98	60 / 61	plus
JLOC1	JLOC1_7379.1	1376	4e-23	1199 - 1259	98	60 / 61	plus
JLOC1	JLOC1_7380.1	1381	4e-23	118 - 178	98	60 / 61	minus
Harvest21	ABC08394	1023	2e-22	949 - 1003	100	55 / 55	plus	ABC08394
Harvest35	U35_3735	1019	3e-25	949 - 1008	100	60 / 60	plus

Contig Sequence (1019 bp)

>U35_3735 1019 Hv_44K_v2
TTGACTTCCAAAATGCCATTGAGAAACTTCCTAACAACATATTTGAGAAGAGTTATCCTC
TGAGAGAGTTTGATCTACAGAAACGAATGAGTGCATTTCTTTACAAGGCTGCTGAGCTTA
GCCTGGTTGGGGTCGTTGCTGGATCTATTCAGGGTGGTCTGTCGAAAGCCCTATCCGCAA
GGAAGGGTAGCAGGTTATCGGTGACCCTTCCTAATGTCAGCACCAATGCTCTTGGTTATG
GAGCTTTTCTAGGACTATATGCAAACTTGCGATATCAATTGTTGTGTGGACTAGATCAAT
ATACGATCAAGCGCTTTGATGTTCTTGGCATGGCAATCTTCATTGGTACAACACTAAGAT
TGATGAATATTCAGATAGGTGAATCGTCAAGGCGCGCATGGCTTGGAGAGGAAGCTGATC
CACAGTGCTCTGATCGATTGCTTAGGGCATACACCAGACCAGTGGAGGTTACTACTCCGG
CGGATCAACAAGAGTCAAGGTGGTTTATATCCAAGGATGCAGTTGTGTCAGGCCTTGGTC
TTCTTGGCATCAAGCAGGGTGGGCATGGGGCACAGCTGTCCAAGCCCCGGCGAAAGAAAG
TTATCCGCAAGAAAGTTGCATCAGGTTGAAATTAGTGGATTTGCTTGCGGTGCTGGAACA
ATTTTGCTTCAGTTCCACTCCTACCGTACTGAGAGTCATTCAAGTGTGAGCAGTGAGGAA
AAGCCATCATTGGGAATCAGCGGCCAGTTTATGGGCCAAGGCATCGAAGGGGCCGTTTGC
CATTTTGTATGTTTTGTTGATTTCTGATAATAATTGACATCTCAATTTCTTGCAGTTTTC
TGAGCCAAATTAGGCACACTTACGGTAGGCTTGAGAATCGACATACTGTCGGTAATATGA
CAAAAGATATTTGCATATAAAAAAAAAAAAAAACAGCTTTTAGTTTATGCTTGTATCGTG
TCGGTGAGATGTAATAGCACTTGGTCGGGTTGCCTTTGTCTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_3735 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g18630.1	433	6e-106	protein\|expressed protein
Brachypodium v1_2	Bradi4g39110.1	540	8e-112
Arabidopsis v10	AT5G24690.1	521	2e-69	Protein of unknown function (DUF3411) \| chr5:8455783-8458513 REVERSE LENGTH=521