barSeed - Barley Seed Development Database

Probe CUST_40635_PI390587928

Source Contig U35_3737

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40635_PI390587928	Hv_44K_v2	GAGGCAATTAGATGTTGTATGTAAAATCAAGCTGGTAATTTATCGCTGTCTCTCATCAGT	2668	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.961	1.939	1.239	0.651	0.268	0.287
Raw	2172.727	3398.962	1880.913	1535.693	224.566	260.674

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61272.1	6162	2e-24	138 - 197	100	60 / 60	minus	ABC08399
JLOC1	JLOC1_40038.1	6097	8e-25	5979 - 6038	100	60 / 60	plus
Harvest21	ABC08399	2757	3e-25	2669 - 2728	100	60 / 60	plus	ABC08399
Harvest35	U35_3737	2757	3e-25	2669 - 2728	100	60 / 60	plus

Contig Sequence (2757 bp)

>U35_3737 2757 Hv_44K_v2
GGCTGCAGGCGCGGTCTTGACTAATTCTGGTAAAGAAACACCTTAGCAACTGATGCTGCT
GCTCCAGCGTTGAAGCGCATTGAGCGAGCTGGCATAGCGGCTGCTACTCCCGTCTCTTAC
CATTCCAGGGAACTGATGCAACTGATACATGAACATCTCCTTGGATCTGGTTTGGCTGCT
ACTGCTGCCATGTTGCAGAAGGAGGCTGACCTTGCACCTTTGCCATCAACTGCTGCAGTG
CTACCTGTCCACCAGTCTGCTGCCCTGGAACCATCATCTGTTCAAGTGCAACAACAGTGG
CCTTCTGGCCGTGTTCAGGGATTTCTGTCCGACAAAACAATGATTGCTGCAGATCAAGCT
GGCCAACGATCAGATTCTATTGTGCCTTCGTCTAAGAAAAAGGCACTGGTATTCTCATCC
AGTTTCTCTAAACGAAATCAACCCTTTGTTTCGTTTTCTGGTAATAGAGCAAGCAATAGC
CTGAAAAGTCCTGTACCTGCTGGAAATGTGGACAGTATGACTTGCTCTGCCTCTGCTGCC
AATACTGGAGATGCCGAGATAGCGCATAGAACACCAATGCCCTTGCCACTTAAGAGGAAG
CTTGTTGATACGGACTTCAGTTCTGCATCAACAGCAAAGCGCCCTGCAATGATGGATCAA
GCATCCCAATCTCCTGTGTTCCAAACTCCTGCTCCTACTCGCAGAGGCCTCTCTGTAGCA
GTGGATTCTCCTACTGCCGCATTTCATCCAGGAAGGACAAACTTCAACAACATTTCCACT
GAGAACTTCGAAGATTCTCAATGCACACCTGGAGTGGTAACATGCACACCACATCTTGGT
GCAAATGATCAACAAACAGGAAATTTGGAGCGCATGACGCTCGACTCATTGGTTGTACAG
TATTTGAAACATCAACACCGCCAATGTCCTGCTCCAATAACAACTTTGCCACCAGTCTCT
CTGCTGCACCCTCATGTTTGCCCTGAGCCTAGCCGCAGCATTTGTGCGCCAGCAAATGTA
ACTGCTCGTATGGGAAGCCGTGAGATAAGCAGGGAGTTTAGCGGGATCCAAGTGCCCCGC
AGGGACCGACAATTTATATACAGCAGGTTCAAGCCATGCCGTGTTTGCCGTGATGAGGCC
TCGCTGTTGACTTGCATGACTTTTATTGGAGATGCATCACGGGTGGCGGCCGGGAACCAT
AGTGGTGAATTAAGAGTATTTGACAGCAACCTTGCAAATCTCATAGAGACACACACGTGT
CACCAAAATCTTGTTACTATGGTGGATTCAACATCTGTTGGTGGAACTGAGCTGATTCTC
TCGTCTAGCACAGATGAGGTTAAGCTCTTTGATGCTTTCTCACTGCATTCAGGGCCCTTG
CACACATTTGATGGCTGCAAAGCTGCCAAGTTTAACCATTCTGGGACTTTATTTGCCGGC
CTTTCTACCAATGGAAATCACCGTGCAGTTCTATTATATGATGTCCAGACGCATAATGTT
GATATGGAGCTTCCTGATAACTCCAGCCTGCCAGGTTCAGGCCGGGGTGTACAACCCATT
ATACATTTCAGTCCTTCAGATGAGATGTTGCTGTGGAATGGGGTCCTGTGGGATAGACGA
AGTCCCACCCCTATCCATCAGTTTGACCAGTTCACGGACTATTGTGGTGGTGGCTTTCAT
CCAGCTGGAAACGAGGTGATCCTAAATTCAGAGGTGTGGGATCTGAGAAAGTTTAAGCTT
CTGAGGAGTGTCCCTTCCCTGGACCAGACAGTAATTAAATTCAATGGAAGTGGTGATGTT
ATCTATGCCATCCTCAGGCGCAACCTTGAGGATGTAACATCATCCATCAATACCCGCAGG
GTCAGACATCCGCTGTTCCCTGCATTCCGCACGATCGATGCTGTCACTTACGCAGACATT
GCAACTGTCCAAATAGACCGTGGCGTCCTTGATCTTGCTGTCGAGCCCAATGATTCCCTT
CTCGGAGTTGTTGCCATGGACGACCCAGATGAGATGTTCTCCTCTGCTCGCATATTTGAA
GTTGGCAGGAAACGACCAACCGACGACGACTCAGATCCAGAGGACGGAGGGGACACGGAG
GATGACGACGACGATGACGACGACTCGGACGTTGATGTCCTCCTTGGGACTGATTTAGGG
CTCGGGGACACGGATTCTGAGGATGATCCAAGTAACAGCAGTGGCGATGATGATGGTGGT
GACGATGAGGATGAGGATATGGACAGTGGGGATGAAAACGATGACGATGATGAGGAAGGT
GACTTTGATGTGGGAGGGGATTTGCTGGACTTCATCGGTGCGGGTGAGGGTGATGAGAGT
GACATGATTGAGTCCTTTAGCAGCGGCGAGGAAGAAGGGTGGCTCATGTGAGAGCAGATG
ACGATTCTTTTTTTCTTTCTACGCATGGTCGCATCGCGGTGACGAGGGCGTCGAGGTGGG
GATGCAGGAGGAGGCAAGGCAGGGCTAGGCTAGGAGGAGCTGAACGAGAAACGATGTCTT
TGGGTCACCGATAAGGGTGCAAACAAGAAATCCAAATCTGTAGGCTCAAATTACAACAGT
TGTAAATTATTGCCTTTTGGGAGAAAGTTTACGTTAAGTGGGTTGGGAGTAGCTGTGGTT
GTTACCTGTGAGAGTGCAACGCAAGTCTGAGGCAATTAGATGTTGTATGTAAAATCAAGC
TGGTAATTTATCGCTGTCTCTCATCAGTTCAAAATTTTGGAAAAAAAAAAAAAAAAA

Homology of Contig U35_3737 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os04g59460.1	1810	protein\|expressed protein
Brachypodium v1_2	Bradi5g27460.1	1905
Arabidopsis v10	AT4G31160.1	1883	\| Symbols: DCAF1 \| DDB1-CUL4 associated factor 1 \| chr4:15145936-15152939 FORWARD LENGTH=1883