barSeed - Barley Seed Development Database

Probe CUST_40631_PI390587928

Source Contig U35_3741

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40631_PI390587928	Hv_44K_v2	ATTGTTTGTGCTTGCCTATTATTATGTCTTGGCTGGAGCAATAGTCCAGCTAACCTCAAA	1013	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.565	1.425	1.221	0.854	0.156	0.222
Raw	85.019	127.887	91.561	105.340	5.724	10.063

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_11142.1	683	4e-23	615 - 671	100	57 / 57	plus
Harvest21	ABC08881	1087	3e-25	1014 - 1073	100	60 / 60	plus	ABC08881
Harvest35	U35_3741	1087	3e-25	1014 - 1073	100	60 / 60	plus

Contig Sequence (1087 bp)

>U35_3741 1087 Hv_44K_v2
GAAAATGTGCTCCATGCCTTCCCCCAAACCCTAAACCTCCGAAAACCCTCCGCCGTCCCC
GTCCCCGTCCCCACACCCTCACTCCCCGCCGAAGCGGAGCGCGGAGAGACCCACCCACCC
ATCCCACGGCGATGTCGACGGCGGCGTACACGGTGCTCCGCGGGTGCCGGTCCTTCATGT
CCTCCGCGGCGGCGGCGGCTGCCGCGGGGAGCAAGAAGCCCGCAGCGGCGGCGGCGGCGG
CGAAGGGGGGCAAGAAGTCCGCAACGGCCGCCGCGAAACCCAAGGCGGCCAAGGAGAAGG
GCCCGGTGGATCCGAACAACCTCCGCGGGATCATGCGGCCGGTGCCGGTCTCCGACGCCC
TGAGCAAGTTCGGCGGCGCCCCCAACATCTCCCGCTCCGGCGTCCTCAAGATCGTCTGGG
ACTACGTCAAGGCCAACTCCCTCCAGAACCCAGCGAACAAGAAGGAGATCATCTGCGACG
AGAAGCTCAAAACCATCTTTGATGGGAGGAACACGGTTCATATGACGGAGGTCACCAAGC
TGTTGTCCCCTCATTTCGTGAAGTCTACCTAACTAAAGCAGCCGAATGGGGGGTTGGCAC
TGGTGCTTTCTGCCCAGAGCCAGCGCTGGAAAAGCTTATTTTGCGACCCCTGTCAAGTCA
ATGTTCTACTAGGTAGTTAAGTAGTCATGGCTTCAGACTTTGTTTGCCATTTAAGGTTTG
GGGCTCGGTGATGATGCATGTAAGAAGGATTCCCTGTGTTTTGTGGTTTGTAGCTCCTGC
CATCATGAGAGGGCACCCACATACACATGCATGTTGATGTGGTTTCAGTGTGTTTAGTCT
GTTAATTCCACTTTGTCCTAGTCATATATATCATGCTGGTCTCTTGGTTGCAGTGGATGG
TGAATTTGTGATAATAAGCAGGTTGTGGTCAAATGTCGTGTCAGTGGCGTTCCTAAGAGT
TCTGCTTGGTTTCCTGTAAGCATCATGGATGGTTACTTGCACGCATATTATACATTGTTT
GTGCTTGCCTATTATTATGTCTTGGCTGGAGCAATAGTCCAGCTAACCTCAAAAAAAAAA
AAAAAAA

Homology of Contig U35_3741 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None