barSeed - Barley Seed Development Database

Probe CUST_40627_PI390587928

Source Contig U35_3745

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40627_PI390587928	Hv_44K_v2	ATGATGGACTTGGTTTGTAGTTGTTTCTGTGAAGGATGAACATGGACTGCTCAATCCAAA	556	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4510.4	1164	6e-24	1034 - 1092	100	59 / 59	plus	ABC09160 ABC09161
JLOC1	JLOC1_2812.1	1312	3e-24	1090 - 1148	100	59 / 59	plus
Harvest21	ABC09161	715	1e-24	540 - 598	100	59 / 59	plus	ABC09161
Harvest35	U35_3745	630	3e-25	557 - 616	100	60 / 60	plus
Harvest35	U35_3744	1214	1e-24	1039 - 1097	100	59 / 59	plus

Contig Sequence (630 bp)

>U35_3745 630 Hv_44K_v2
TCCTGCTCGCATTTTCTCTCATCAGCAAAGCAAGTTACGAGAATGTCACTAAGAAGTGGA
TTCCAGAGTTACGGCACTATGCTCCTGGCGTGCCCATAATTCTTGTTGGAACAAAGCTTG
ATCTGCGGGATGACAAGCAGTTTTTTGTGGATCACCGTGGCGCGGTTCCTATTTCCACTG
CTCAGGGTGAAGAGCTGAAGAAGGTGATTGGCGCGACTGCATACATCGAGTGCAGCTCAA
AAACACAGCAGAACATCAAGGCGGTGTTTGATGCGGCGATCAAGGTGGTCCTCCAGCCTC
CGAAGCAGAAGCGGAAGAAGAGGAAGTCACAGAAAGGATGCAGCATCTTGTAAAACTAAA
ATCCCTTTTGTTTTGCAGTGTCTCGCTTCGATCAAAGGGATCATCATCATCATCATCGCC
CAGCCTCGCCTCCCCTCTCCTCCCTTTGTCGCTGCTGCTGTTGTTGCTGTTGTATAATAT
ATAATTTGGCTTGATAAGTAAGATATGTATGTAGGTTTGACATATTTTGTTAAGAATTTG
CAGGCAGCAGCTGCTCATGATGGACTTGGTTTGTAGTTGTTTCTGTGAAGGATGAACATG
GACTGCTCAATCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_3745 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g58730.2	196	6e-59	protein\|ras-related protein, putative, expressed
Brachypodium v1_2	Bradi3g60900.1	198	2e-59
Arabidopsis v10	AT4G35020.1	198	5e-56	\| Symbols: ARAC3, ROP6, RHO1PS, ATROP6, RAC3 \| RAC-like 3 \| chr4:16673176-16674540 FORWARD LENGTH=198