barSeed - Barley Seed Development Database

Probe CUST_40626_PI390587928

Source Contig U35_3746

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40626_PI390587928	Hv_44K_v2	TCCAGTAAATAGAAATCAAGAAAGATCGGCGATGAGCGCATCTCGGTTCATCAAGTGCGT	234	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.306	0.500	1.236	2.337	1.039	1.631
Raw	9.626	23.086	53.949	166.547	25.558	42.789

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4510.4	1164	2e-24	206 - 265	100	60 / 60	plus	ABC09160 ABC09161
MLOC	MLOC_4510.3	698	2e-24	142 - 201	100	60 / 60	plus	ABC09160 ABC09161
MLOC	MLOC_4510.2	1011	2e-24	287 - 346	100	60 / 60	plus	ABC09160 ABC09161
MLOC	MLOC_4510.1	1314	2e-24	453 - 512	100	60 / 60	plus	ABC09160 ABC09161
JLOC1	JLOC1_2812.1	1312	8e-25	262 - 321	100	60 / 60	plus
Harvest21	ABC09162	532	3e-25	235 - 294	100	60 / 60	plus
Harvest21	ABC09160	1072	1e-24	206 - 264	100	59 / 59	plus	ABC09160
Harvest35	U35_3746	524	3e-25	235 - 294	100	60 / 60	plus
Harvest35	U35_3744	1214	1e-24	206 - 264	100	59 / 59	plus

Contig Sequence (524 bp)

>U35_3746 524 Hv_44K_v2
ATGGATGCATCCATCCATCCATCCAAGACCAAGAGTGAAAGGGAGGGACCTAACTGCAAA
TTCTTGCTCTGCTCTGCTCTGCTCTGCTCGCTGTCGCCGGCGCCCGGCAGCCGACGACAG
GCAACAACCGCAGCGCAGCCTTCCTTCCTTCCGGATCCATCTACTCGTACTAGTTATCTA
CTACTCCTACTTTACTTACTAGAGTCGATTCCATCAGGGAAGCATATAGACTAGTCCAGT
AAATAGAAATCAAGAAAGATCGGCGATGAGCGCATCTCGGTTCATCAAGTGCGTGACGGT
GGGGGACGGCGCCGTGGGAAAGACATGCCTCCTCATCTCATACACATCCAACACCTTCCC
CACAGACTATGTCCCAACAGTTTTCGACAACTTCAGCGCTCCCGTCGTGGGTTGACGGCA
GCACCGTCAACCTCGGATTATGGGATACTGCAGGACAAGAAGACTATAATCGACTACGCC
CACTAAGCTACCGTGGTGCCGATGTCTTCCTGCTCGCCTTTTCT

Homology of Contig U35_3746 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None