barSeed - Barley Seed Development Database

Probe CUST_40625_PI390587928

Source Contig U35_3747

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40625_PI390587928	Hv_44K_v2	CGAGGCCGGATGTGCCATATATTATGTAGTAATGCCAAATATTATGACATGGATGTGTTA	1714	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375256	3614	2e-24	3526 - 3585	100	60 / 60	plus	ABC00387
MLOC	MLOC_350.1	413	2e-24	182 - 241	100	60 / 60	plus	ABC00387
MLOC	MLOC_78739.1	218	7e-23	4 - 60	100	57 / 57	plus	None
MLOC	MLOC_2510.1	267	7e-23	138 - 194	100	57 / 57	plus	ABC00387
JLOC1	JLOC1_223.1	413	8e-25	182 - 241	100	60 / 60	plus
JLOC1	JLOC1_1501.1	270	4e-23	139 - 195	100	57 / 57	plus
Harvest21	ABC00387	1195	3e-25	45 - 104	100	60 / 60	minus	ABC00387
Harvest21	ABC00311	686	3e-25	129 - 188	100	60 / 60	minus
Harvest35	U35_3747	1902	3e-25	1715 - 1774	100	60 / 60	plus

Contig Sequence (1902 bp)

>U35_3747 1902 Hv_44K_v2
TCCCCCGGGCTGCAGGCAAAAGACACACTGGATAAAAAAAACACAACCAGCGCCCCTCCC
TCTCGCGACTGAAAATAGCTAGGGTTCCACCGCGAGCCTCCCAGCCGCCGCCGGTGCCCT
CCGCCGTCGTGAGCCTCCCACCCGCTGTCGCGAGCCTCTCCGCGGCCGCCGGTGCCCTCC
GCCATCGCGAGCCGTTGCCAGTGCCCTCCCCGGCTGCCGCCACCGGTGCTCTCCCAGCCA
CTGTCGTCCGTCTGCAGACGCCATGGAGCCGGCGGTGCGCGTGCAGCTGGCAAGGCTCGG
TGAGGACAACCGCCAGGAGGGGCTGTGCAGGCGGTCGTCGCCCCATCCGCTCCGTCCTCT
CCTCGAGGCCCAGTTCGAGCGGGCAACATGGCGGTCCCAGATTCGCGGCGGATCTGGCTC
GCCCACCTCTTTCCCCAGCCGGAACAGTCATGACCACGTACATATCGGGGACAAGCTCTT
GACGACTCCACCGTTTGACGATGATCTAGCTATTGGGCGTTCAGGACCTGAGTGTACTGC
AGGAAAAGACCATGGAGATGGACAAGGAAAAGATGTATCATACAGTTTATCAAGGAAGGT
CTAGGAACATGCTGTGAGTTGAGATCAGCATGGCCTGCAACCACAACAAGACAAGACGCC
TACCATGCATATATATTTTCCTTTCAAGTAGCAACAACTTGACTATGTTGTCTATGACAT
AACAAGGACGAGATATGACAACCTTCTGCATGTGTCAATAGTAAGCTCTCTTATGTTTTG
TTGTAAAAATTAGTTAACCTCCAGAATTATTATGTTTTATTTATTTTCTCACATCAAGTG
TGCTTGAGTGAAATCAGATGGTGGCTCTTTGGAAGGAACTGTCAAGAGTAAACGGAAGAA
ACATCTGTTTTCTCATACTTTATTTCATTTCTTTTTCTCAGATTCTACTCCAAAATAGTT
TTTGGTTTGGAGCATTTTCACTGGTTCTTTCCAAGTTTCGTTCTTCTCTTCATTGTCTAT
CGCTTCTCTATCAGAATATTATAATTAGTATACTCTTGGTTTCCTAAGTTATATGATTTA
TTTGTTGCTAGGATTATTCTGACATGTGTAAGCCTTGATTTTGATGAACAAGAGCCTGTT
TTTTGGCACGACTCCCAGCTGCAGGAGAGCATCAAGATCTACTGCGCGGTGAACGATGGC
ATCATCAACCTCGTGGATGTGCCACCGACGTCGTTTCTTGTGACGATGGAAGAGTACATC
AGAGAAGCTCCCAGGGCTGGTCAGGTTGCAAACAAGACCATTGTTGTGGCAGGAACATCC
ATATCTGGTCTGCTGGCCAATTTTAAATTCTTGTTTATGTGGAGAGGCGCCGAGCCAGCT
GCTAGTGTCCTCTGTTGTTGGAAGTTGTTGATGAGATGAATGTGGGCATCAACCGACCTC
AGCAGCAGCTCCAGGAATAGCCTTCACCTGGGTGTGTCGTGTGCAGCACCACCACCACTA
GTAGCAGCAGCTCTAGGATAAGGCCTAGATGTGGAGTGGAGGAGTGCCGTGTGCAGCAGC
CACCAGTAGTAGCAGCAGCTCGGGAGAGGAGGATCGCCTGGGCCTAGAAGTGGAGGCGCT
TGGACCTGGGTGCAGTCTTGGAGGTGGAGGCGCCAGGATCTGGGTAGAGGTGGATGTGGA
GGTTGAGGACAGGGCCGACGGTGGAGGTCGAGGGCGAGGCCGGATGTGCCATATATTATG
TAGTAATGCCAAATATTATGACATGGATGTGTTATATATATAATGGGATATGGATTATGT
TAAAAAAAAAAAAAAAAAGCTATGAATTATGCTATATGTTGTATGTATGTGTTATGTTGG
GTGCTATATGCTATATGTATGTGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_3747 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None