barSeed - Barley Seed Development Database

Probe CUST_40622_PI390587928

Source Contig U35_3750

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40622_PI390587928	Hv_44K_v2	CTATTCTAATTCCCACCTAGCAGGGGTGTTTCTTATATCTTTGCTTCAGAGAACTCGCTT	856	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.105	2.295	1.072	0.791	0.406	0.451
Raw	915.563	1591.829	631.015	761.386	131.138	161.890

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38006.3	1821	2e-24	1168 - 1227	100	60 / 60	minus	ABC09147
JLOC1	JLOC1_24672.2	2453	8e-25	1113 - 1172	100	60 / 60	plus
JLOC1	JLOC1_24672.1	2006	8e-25	666 - 725	100	60 / 60	plus
JLOC1	JLOC1_24671.1	1627	8e-25	1259 - 1318	100	60 / 60	minus
Harvest21	ABC09147	919	3e-25	857 - 916	100	60 / 60	plus	ABC09147
Harvest35	U35_3750	919	3e-25	857 - 916	100	60 / 60	plus

Contig Sequence (919 bp)

>U35_3750 919 Hv_44K_v2
GAGGACAAGTAGCGAGCCTCGAGGAACTTCTCGGCTCGGCTTCTCCTCCAACCCCATTCA
TTGCCTTTCCAGTGATTCCCACGGCCCGCAGCTAGCTCCGCCGTCGCGGTACCGGGAGGG
GGGAGGGAGATCAGACTGTGAGATGGCCTCGCCGGAGCCATCGGCCGCGGCCGGCCAGAG
GGCAGCGGTGGAGCCGCTCCAGCTGCCAACGCCGGAGGAGATCAAGGGGCAGGAGATGAT
GAACAACTGTGCCGTCCGGAGCGTCCTCAGTGGTGTCATGGGGGGTGGTCTTGGTGTACT
TATGGGACTATTTTTTGGAGCTTTGGAAAACCCAATAATGCAAGAGGAGATGACAGCAAG
GCAACAAATAGTCTACCAGGCAAAACAGATGGGTAGAAAAAGTATGAGCCATGCTAAGAC
CTTTGCAGTAATGGGCTTGATTTTCTCTGCAGCTGAATGCGTCGTAGAGAAGGCTCGGGC
AAAGCATGACATTACCAATTCGGCAGTAGCTGGCTGTGTCACGGGAGGGGCTTTAGCTGC
AAAAGGTGGCCCTCAAGCTTCATGTATCGGGTGCGTGGGTTTTGGTGCCTTCTCTGTGGC
TATTGAGAAGTTCATGGAGCGATATAACTGAAGCGGATTCAGCATTGGCCGAAGAACTTT
TTGGTTATTTCGCAACATTCAGTCGTTGGCATGTACTCAGAGATGGTGTAACCTGAATTT
TACGTCTTGCGGCAATCCATGGCACTGAGTAGCTATATTATTTCTCCAGTCTGTAGCCAG
GTTGATGCCATGGTATGTCGCATACGCATTTTCACTAATGCGATCTCGTACAATGTGAGC
CGGGCTAGCTGCATTTCTATTCTAATTCCCACCTAGCAGGGGTGTTTCTTATATCTTTGC
TTCAGAGAACTCGCTTTAA

Homology of Contig U35_3750 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g18500.1	168	8e-73	protein\|mitochondrial import inner membrane translocase subunit Tim17, putative, expressed
Brachypodium v1_2	Bradi1g65220.1	171	5e-69
Arabidopsis v10	AT3G10110.1	173	4e-56	\| Symbols: MEE67 \| Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein \| chr3:3116225-3117378 FORWARD LENGTH=173