barSeed - Barley Seed Development Database

Probe CUST_40617_PI390587928

Source Contig U35_3755

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40617_PI390587928	Hv_44K_v2	TCTCCTGTGGCCTGTATTATCCATGCGTGTTACTATTTCTTATAGCCATATATTTGCCAT	1517	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356320	1661	2e-24	1484 - 1543	100	60 / 60	plus	ABC01921 ABC01923
MLOC	AK356074	1679	2e-24	1443 - 1502	100	60 / 60	plus	ABC01921 ABC01923
MLOC	MLOC_3078.2	1315	2e-24	74 - 133	100	60 / 60	minus	ABC01921 ABC01923
MLOC	MLOC_3078.1	3435	2e-24	158 - 217	100	60 / 60	minus	ABC01921 ABC01923
JLOC1	JLOC1_1849.2	1347	8e-25	1154 - 1213	100	60 / 60	plus
JLOC1	JLOC1_1849.1	1342	8e-25	1149 - 1208	100	60 / 60	plus
Harvest21	ABC01921	1603	3e-25	1518 - 1577	100	60 / 60	plus	ABC01921
Harvest35	U35_3755	1603	3e-25	1518 - 1577	100	60 / 60	plus

Contig Sequence (1603 bp)

>U35_3755 1603 Hv_44K_v2
TTCTCGCGCACCCTTAAACCCCAGAAGCCTCCATCCGCAGCCCCCCACGAAAACCCTAGC
CCGCCATGGCCCTCGCGCTCCGCCTCCGTCGGGCCCTCGCCGCCGCCTCCACCTCCGCGT
CCCTCCTCCGTCCGACCGCCTCCGCCGCGGCATCCCCCCATCGGTCCCCCCTCCTCGCCC
CCTTCGCCGCGCCGCTGCCGCGCCCGTTCCTCCCCGGCGGCGCCGCCGGCTTCCGGTCGA
CGGCGGCGGCAGCGGCACGGGGAAACTACGGCGGTGGCGCAGACGAGGCCAAAATCGACC
CCGACGAGATCCTCTTCGAGGGGTGCGACTACAACCACTGGCTCATCACCATGGAGTTCC
CCGACCCCAAGCCCTCCCGCGAGGAGATGATCGAGACCTACCTGCAGACCCTCGCCAAGG
TCGTCGGAAGTTATGAGGAGGCTAAGAAGAGGATGTATGCTCTTAGTACAACAACATATG
TTGGTTTTCAAGCTGTAATGACTGAGGAAATGTCAGAAAAATTTCGCGGATTGCCTGGAG
TTGTTTTCATCTTGCCTGATTCATATTTATACCCAGAGACAAAGGAGTATGGAGGAGACA
AATATGAGAATGGTGTCATAACTCCAAGACCACCACCTGTTCAGTATAGCAAACCGTCAA
GGACTGACAGAAACCGCAACTATCGTGGAAATTACGAAAACAGTCCTCCATCGCAAGGTA
ATTACCAGAACAGCGCTCCACCCCAAGGAAATTACCAGAACAGCTCGCCACCACAAGGAA
ACTTCCAAGCGTACCGTCCGCAGCAAGATGTAAGAGGCCATGCTCCACAGCAGAATTACA
CACAAGCTGGACAAGATGGCAGAGGTTATGGGAGGAATGATTCTGCCGACCGTTCAGGTT
ACAATGCGCCTGGTGGGTACCAAGGGCGTGTAAATGAAGCCGGTCAAGGTTTCCAAAACC
CACAAGAGCGCAGGAGTTTCTCGCAAGGACAGGCAGGAGATCTCAGGCCTGGTGGCCCTT
CTGCACCTGGAAACTATGGTCAACCGCCTGCACCTGGAAACTATGGTCAACCGCCTGCAC
CTGGAAACTATGGTCAACCGCCTGCACCTGGAAACTATGGTCAACCGCCTGCACCTGGAA
ACTATGGTCAACCGCCTGCACCTGGAAACTATGGTCAACCGCCTGCACCTGGAAACTACG
GTCAACCGCCTGCACCTGGATCCTACGGGAAGCCAGCTTATGGGCAACCGTCTGGATCGA
GATATCCTGGAGGTAACCTAGGGGGTCCTGCTTATGGTGGAGACAACAGACAGGGTGCAG
CACCTGCATATGGGGGAGATAACTTACAAGGGGCTTCCGATCAGTATCCTGGCCCAGGTG
AAGGACAAGGGAACTGGCAGGGTAGGCAGTAAGGACCTGATGAGAAGTAGCTTCATGAAG
AACAAGGCATTAGTTGCTCTACTACTTGGAATGTAGAAATTTCCACCTGTAAAATAAACA
ACTGAACTACTTTATCGTCTCCTGTGGCCTGTATTATCCATGCGTGTTACTATTTCTTAT
AGCCATATATTTGCCATTTTAAAAAAAAAAAAAAAAGAAAAAA

Homology of Contig U35_3755 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g11020.1	375	2e-142	protein\|DAG protein, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi4g22160.1	424	0.0
Arabidopsis v10	AT4G20020.1	419	7e-62	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44780.1); Has 28928 Blast hits to 16023 proteins in 1033 species: Archae - 4; Bacteria - 4155; Metazoa - 15463; Fungi - 2938; Plants - 3091; Viruses - 205; Other Eukaryotes - 3072 (source: NCBI BLink). \| chr4:10844433-10846085 REVERSE LENGTH=419