barSeed - Barley Seed Development Database

Probe CUST_40616_PI390587928

Source Contig U35_3756

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40616_PI390587928	Hv_44K_v2	ATCTGAACAAATATACACAAGACAGTGATGACTCTGATACTGAGAGCCACCGCGTGATTC	380	GeneList: ivory MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.282	0.925	1.730	1.169	0.799	0.653
Raw	381.788	387.730	700.260	668.823	177.774	160.032

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69668.3	3247	2e-24	382 - 441	100	60 / 60	plus	ABC05342 ABC38388
MLOC	MLOC_69668.4	3844	2e-24	131 - 190	100	60 / 60	plus	ABC05342 ABC38388
MLOC	MLOC_69668.1	2541	2e-24	471 - 530	100	60 / 60	plus	ABC05342
MLOC	MLOC_69668.2	3390	2e-24	468 - 527	100	60 / 60	plus	ABC05342 ABC38388
JLOC1	JLOC1_46182.1	3358	8e-25	430 - 489	100	60 / 60	plus
Harvest35	U35_3756	547	3e-25	381 - 440	100	60 / 60	plus

Contig Sequence (547 bp)

>U35_3756 547 Hv_44K_v2
GTGCTCCAAGCAAACCCTAGCCTCTCCATCTCCACCTCCACCTCCAGCCTCCGCGCCTCC
GCTCTGCACGCCGCCGGTCCCTCAACACCCTCCATCCACGTCCGCTGTCAGCCGCTGAGC
GCGCGGCCGCACCCGTCTACTCCGCCGCTCCAATTCTCCGTTCTCCGCTGGATCTGAACC
TCATCCGCTCCACGGCCGCGACTCAAGCTTGAAGACAGTTGAAGGTAATTTACAAGCAGC
AGCAGCCATGGCGTCTCGTTTTTGGGGACAGGGAGACAGTGACTCTGAGGAGGATGTGGA
CGAGATCGAGTCAGAACAAGGGAGTGATAGCGAGAAATCAGAAGCTGGTGATGGGGGACG
CGATGGGTCCAAGAACCGTTATCTGAACAAATATACACAAGACAGTGATGACTCTGATAC
TGAGAGCCACCGCGTGATTCGCTCGTTGAAGGACAAGCGCATGATGAGATGAAAGCTACT
GCCGACCGATGCGCATGCATGAAGATCATGACTGGATAGCTTGCAGAGTGTTTGACAGCT
AACAGCA

Homology of Contig U35_3756 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None