barSeed - Barley Seed Development Database

Probe CUST_40583_PI390587928

Source Contig U35_17331

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40583_PI390587928	Hv_44K_v2	GTGACTGAAATCATGTAGATACTAATTCCCTTATTACTGACTTCCTCTCAAGGCAAAAAA	1792	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250579.1	1925	9e-22	1858 - 1912	100	55 / 55	plus	ABC09086
JLOC1	JLOC1_855.1	1050	5e-22	841 - 895	100	55 / 55	plus
Harvest21	ABC09086	1863	3e-25	1793 - 1852	100	60 / 60	plus	ABC09086
Harvest35	U35_17331	1863	3e-25	1793 - 1852	100	60 / 60	plus

Contig Sequence (1863 bp)

>U35_17331 1863 Hv_44K_v2
CCAGAAACACCGCTCCCGCCCCCGCCCCCCGCCCCCCCGCCGCGTGCCGCGTCGAAGGGA
GCGAGGAGGGCGAGGATGGTGAGGCTCCCGTACCTGACCGCGCTCACCACGCTCTTCAGC
TACGGCCTCCTCTTCGCCTTCGGCCACTTCCGCGACTTCTTCCGCCGGATCCTCGACGCC
GGCAAATCCAGCAACCTCAAGGGTTACGCGCCCATTTGCCTGGGGTACGAGGATTTCTAC
ACGCGCCGCCTCTACCTCCGCATCCAGGACTGTTTCGGCCGACCTATTGCCAGTGCGCCC
GATGCTTGGTTTGATGTAGTTGAGCGTCAATCAAATGACGGCAACAAGACACTCCAACGT
ACCACAAAAACATCCAAGTGTCTTAACTTGGGTTCCTACAACTACCTTGGTTTTGCTGCA
GCAGATGAGTACTGCACTCCTCGTGTTATCGAGTCACTCAAGAAATACTCTGCCAGTACT
TGCAGTGCCCGAGTTGATGGAGGAAATACTAAGCTGCACACAGAGCTCGAGGAGCTAGTT
GCACGATTTGTTGGCAAGCCTGCAGCTATTCTTTTTGGCATGGGTTATGTGACAAACTCT
GCAATCATTCCTATTTTGATTGGGAAGGGTGGGCTGATAGTTAGTGATTCATTGAACCAT
ATTTCTATAGTGAATGGAGCCAGGGGTTCAGGGGCTACTGTCCGGGTTTTTCAACATAAC
AATCCTGCACATTTGGAAGACGTACTTAGGGAGCAGATTGCAGGGGGACAACCTCGTACA
CACAGGCCATGGAAGAAGATAATTGTGATTGTTGAGGGAATTTATAGCATGGAAGGGGAG
TTATGCAACCTCCCTGAGATTATGGCTGTCTGCAAGAAATACAAGGCTTACACATATTTA
GACGAGGCACACAGTATTGGAGCTGTTGGAAAGACTGGAAGAGGTGTATGTGAACTACTA
GGAGTGGATCCAGCTGATGTGGACATCATGATGGGAACATTTACAAAATCATTTGGATCA
TGCGGAGGTTACATTGCAGCATCAAAAGAGATCATTCACCATCTTAAGCATGCATGCCCA
GCCCATATTTATGCAACGTCCATGTCACCTCCAGCAGTCCAGCAGGTTATCTCTGCGATA
AAGGTTGTCCTTGGGGAAGATGGATCTAACAGAGGGGCCAAGAAGCTTGCTCAGATTCGG
GAGAACAGCAATTTTTTCCGTTCAGAGCTTCAGAAAATGGGTTTTGAGGTGCTGGGAGAT
AATGATTCACCTGTCATGCCTATCATGCTTTACAATCCTGCTAAAATTCCTGCTTTCTCA
AGGGAGTGCCTGCGACAAAATGTTGCTGTCGTGACTGTTGCATTTCCTGCTACGCCACTA
CTACTTGCCAGAGCTAGGATATGTATCTCAGCTTCCCAATCCAGGGAAGATCTAATTAAA
GGGTTGGAGGTTATCAGCAAAGTTGGTGATCTCATCGGAATCAAGTACTTCCCAGTTGAG
CAAGAGAAGATTGCATCTGTTGACAAACTTAAGAAGATTGAGTGAATAGTGACAATGGAC
AATTGGGCGAATTCTGCTGCTGTTATGCTAGATCTACTGGGTCATCTTGGTAGTGCACCA
TGCCTTAGTTTTGCTCTTTTGTGCACCTCAGGACCCTTCATTTTCCTTTTTCTGAAGTGG
TTTTGATTTTGTACAGACTGTATTATCATCCATCATAGTTTGAAACATAACACGGTTCTA
CACACTGTTTTGTCGAATTCAAGAAAAAAGGAATCCCTGTACAACCTTGTAAGTGACTGA
AATCATGTAGATACTAATTCCCTTATTACTGACTTCCTCTCAAGGCAAAAAAAAAAAAAA
AAA

Homology of Contig U35_17331 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g70380.1	490	protein\|serine palmitoyltransferase 2, putative, expressed
Brachypodium v1_2	Bradi2g59530.1	490
Arabidopsis v10	AT5G23670.1	489	\| Symbols: LCB2 \| long chain base2 \| chr5:7981889-7985037 FORWARD LENGTH=489