barSeed - Barley Seed Development Database

Probe CUST_40582_PI390587928

Source Contig U35_31625

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40582_PI390587928	Hv_44K_v2	ATAAGCATAGATCCGGAGATTCCCAAATAGGTACACACCACCATTCAGAGGAACCACACA	88	GeneList: darkmagenta MasterList: Structural_proteins_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.329	3.032	1.220	0.656	0.690	0.702
Raw	67803.333	63417.433	26041.167	19801.867	7923.837	9148.777

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_31625	489	3e-25	89 - 148	100	60 / 60	plus

Contig Sequence (489 bp)

>U35_31625 489 Hv_44K_v2
CAAAAGAGGAAAGGCTTGCGGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGCA
AGCGACGAAATGCTTCGGGGAGTTGAAAATAAGCATAGATCCGGAGATTCCCAAATAGGT
ACACACCACCATTCAGAGGAACCACACACCACATCCACTTTATCTATCCATCGCTCGTTG
AGAGGTTCGGAAGCGGTGAAGCACAAGTGCAGCAACAGCTGCGAGAAAGCAGCAATGGCG
AGGCACAGCCTCCTTGCCGTGCTCCTCGTCGGGCTGCTCGCGGCCTCCGGCTTCAGCCTC
GCGGCCGCTGCTGGCCGGGGCCTCGTCGAGAAGCTCCCCGAGCCGGAGCCGATGCCAAAG
CCAGAGCCTAAGCCAGAACCCAAGCCCGAGCCGATGCCTAAACCAGAACCGAAACCTGAG
CCCAAACCTGAGCCTATGCCTAAACCAGAACCGAAACCGGAGCCCAACCTGAGCCATGCC
AAACCTGAA

Homology of Contig U35_31625 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None