barSeed - Barley Seed Development Database

Probe CUST_40577_PI390587928

Source Contig U35_17334

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40577_PI390587928	Hv_44K_v2	TTTTCTCCGTGTTGTGATTCTTTCGTGTGCTTTGAGGAAGAACCCTACGGTCATCGTTTC	2047	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.572	1.539	1.039	0.897	0.387	0.458
Raw	3511.193	5298.150	3223.533	4303.927	672.691	848.887

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370661	2126	2e-24	2003 - 2062	100	60 / 60	plus	ABC07947
MLOC	MLOC_37267.1	2332	2e-24	171 - 230	100	60 / 60	minus	ABC07947
JLOC1	JLOC1_24116.1	2315	8e-25	2094 - 2153	100	60 / 60	plus
Harvest21	ABC07947	2277	3e-25	2048 - 2107	100	60 / 60	plus	ABC07947
Harvest35	U35_17334	2277	3e-25	2048 - 2107	100	60 / 60	plus

Contig Sequence (2277 bp)

>U35_17334 2277 Hv_44K_v2
GTCACCGCATAACGCACCGTCCACTCCCGTCCCCCTCTCTCCTCCCAGATCAACCGAATC
GACCAATCAAATCAAGCAGCCAAAAATGGCGCAGCTGCAGGAGACGTACGCGTGCTCGCC
GGCGACGGAGCGCGGGCGCGGGATCCTGCTGGCGGGGGACGCGAAGACGGAGACGATCGC
CTACTGCTCCGGCCGCAGCGTCGTCTTCCGCCGCCTCGACGCGCCGCTCGACGCCTGGGC
ATACACGGAGCACGCCTACCCGACCACCGTCGCCCGCTTCTCCCCCAACGGCGAGTGGGT
CGCCTCCGCCGACGCCTCCGGCTGCGTCCGCGTCTGGGGCCGCCACGGCGACCGCGCCCT
CAAGGCCGAGTTCCGCCCCATCTCCGGCCGCGTCGACGACCTCCGATGGTCCCCCGACGG
CATGCGCATCGTCGTCTCCGGCGACGGCAAGGGCAAGTCCCTCGTCCGCGCCTTCATGTG
GGACTCTGGCAGCACTGTTGGTGACTTTGATGGGCACTCAAAGAGAGTTTTGAGTTGCGA
TTTCAAGCCAACCCGACCATTCCGCATCGTCACATGCGGTGAAGATTTTCTGGCAAACTA
CTATGAAGGACCACCATTCAAATTCAAACATTCCATAAGGGATCACACTAACTTTGTTAA
CTGTATCCGGTACGCACCTGATGGAACCAAGTTTATCACTGTGAGTTCAGATAAGAAGGG
TTTAATATATGATGGCAAAACTGGAGACAAGATTGGAGAGCTATCCAGTGAAGGCAGTCA
CACTGGGAGCATATATGCTGTTAGCTGGAGTCCTGACAGTAAACAAGTTCTAACAGTTTC
TGCTGATAAAACTGCGAAAGTATGGGATATCAATGAGGATGCAAGTGGAACGTTGAACAG
AACTTTGGTTTGTACTGGTATTGGTGGTGTCGATGACATGCTTGTGGGTTGCCTCTGGCA
GAATGATAATCTTGTCACAGTCTCTCTTGGTGGGACATTTAATGTCTTCTCCGCAAGCAA
TCCAGACAAAGAGCCAGTATCATTTGCAGGACATTTGAAGACTGTTAGTGCGCTGGCACT
TTTTCCTCAAAGTAACCCAAGAACTATGCTATCTACAAGCTATGATGGGGTTATCTTAAA
ATGGATACAGGGTGTTGGATATGGTGGCAGGTTGATTCGTAAGAACAACACCCAGATCAA
ATGCTTTGTTGCCACAGAAGAGGAGCTGATCACTTCAGGGTATGATAACAAGGTCTTCAG
AATTCCTGTTAATGGAGATCAGTGTGGAGATGCTGAGTCAACTGATGTAGGGGGTCAGCC
AAATGCTTTAAACATTGCACTTCAACAACCTGAGCTTGCACTGGTTACCACAGATTCTGC
GATCGTATTGCTGAACAAGTCAAACGTCACTTCCACAACCAAAGTTAGTTACACCATCAC
TTCGTCTGCTATTTCTCCTGATGGAACTGAAGCTATCGTGGGTGCACAAGATGGGAAACT
GCGGATCTATTCCATCAGTGGGGATACTGTTACAGAAGAAGCGGTACTTGAAAAACACCG
GGGTCCTATTACTACCATACATTATTCGCCAGATGTTTCCATGTTTGCATCTGCTGATTC
CAACAGGGAAGCTGTCGCATGGGATCGAGCAACTCGAGAGGTGAAAGTGAAGAACATGCT
GTTCCACACAGCTCGGGTAAACTGCCTGGCCTGGTCACCCGACAGCCGTTTCGTCGCCAC
GGGCTCGCTGGACACCTGCGCAATCATATACGACGTAGACAAGCCGGCATCCAGCCGCAG
CACCATCAAGGGAGCTCACCTCGGCGGGGTCCACGGGATCTCCTTCACCGACAACGACAC
CCTGGTGACCGCCGGCGAGGACGCGTGCGTCCGTGTCTGGAAACTGGCGGCGCAGCAGTA
GGCGCGCATCCTCGTTCATCAATTAGCAATGGCCGCCTATCGAAGGAAACATCGCTATGG
TCGGTCGCTGTTTTCCTCAGGCCGCGGTGGCGGCGCTTTCTAGTCTGTTTTTTTTTTCCT
TTTTTCTTTTTCTCCGTGTTGTGATTCTTTCGTGTGCTTTGAGGAAGAACCCTACGGTCA
TCGTTTCCTTCCCACGCGCCGTCTGGTTTTGTGAGATGCTGAGAATACAGGGGGTGATGG
TGTGTTGTGACATTTTGTTTTCCGTGTGCTCCCTGGAGTGGAGTGGTTGTTAATAACTAA
GACAACTTATGTGCTTCCATTTTCATGAAATCATCATCATAAAAAAAAAAAAAAAAA

Homology of Contig U35_17334 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g03510.1	611	protein\|WD domain, G-beta repeat domain containing protein, expressed
Brachypodium v1_2	Bradi2g01827.1	592
Arabidopsis v10	AT3G18060.1	609	transducin family protein / WD-40 repeat family protein \| chr3:6183880-6186788 FORWARD LENGTH=609