barSeed - Barley Seed Development Database

Probe CUST_40574_PI390587928

Source Contig U35_31629

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40574_PI390587928	Hv_44K_v2	TTTGATGACCTCAAGACTGCTGCTCAAGAGCAGATTGACTTCATGCTCCATGATGGTGAT	377	GeneList: darkturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.366	0.371	1.238	2.947	1.321	0.887
Raw	2.827	5.284	23.576	92.260	13.894	9.813

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4183.1	1658	2e-24	771 - 830	100	60 / 60	plus	None
JLOC1	JLOC1_2565.2	1742	8e-25	828 - 887	100	60 / 60	plus
JLOC1	JLOC1_2565.1	1674	8e-25	760 - 819	100	60 / 60	plus
Harvest35	U35_31629	484	3e-25	378 - 437	100	60 / 60	plus

Contig Sequence (484 bp)

>U35_31629 484 Hv_44K_v2
GTAATAATAACTGCATTGAAGTCGAGTGCCCGAGGGCTGAGTATGACCATTATGTCAAGT
TGTTGAAGTTTATGTATCTTTCAAGAGAATCGATCGAGGAAGAGTTCACCTCTGTTAAGT
CAGCTCTTGGCGTTCTTCGAGCAGCGACCTCTCTCAAATCCGAGTTCATTGCTGAAACCT
GTATCGGATACCTTGAATCTGCCTCCTGGGACGAAAAAGAGGAGGAGGAGATTTTACAAT
TTGCTCAGACCCTGGGTCCAGAAGCTGCTGCACCTTTGTTAGCCCGTTTGCAAGCTCCCA
GTGCGAACGCTGTGAAGACTGTTTTCATCTCCGCTGTACGTTTTGCTACGTCCATGGAAA
TTTCATCCGCTCCCGTCTTTGATGACCTCAAGACTGCTGCTCAAGAGCAGATTGACTTCA
TGCTCCATGATGGTGATGATCCTGNCATTGTTATGATGGATGAAGATGTAAGGTCTGTCT
TGAG

Homology of Contig U35_31629 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g03840.1	434	3e-51	protein\|H-BTB4 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with H family conserved sequence, expressed
Brachypodium v1_2	None
Arabidopsis v10	None