barSeed - Barley Seed Development Database

Probe CUST_40569_PI390587928

Source Contig U35_17339

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40569_PI390587928	Hv_44K_v2	GAAGTTCATGATCCATGCACTGTGATCACTATTGGTGTATTTTGACACTGCCACTTGAAT	765	GeneList: skyblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.268	0.444	2.302	2.710	1.234	0.781
Raw	18.816	51.811	223.473	407.085	67.120	46.994

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248690.1	3053	3e-21	1733 - 1792	97	59 / 61	plus	ABC13100
MLOC	MLOC_64185.1	3162	3e-21	1351 - 1410	97	59 / 61	minus	ABC13100
JLOC1	JLOC1_42112.1	3452	2e-21	1855 - 1914	97	59 / 61	plus
Harvest35	U35_17339	828	3e-25	766 - 825	100	60 / 60	plus

Contig Sequence (828 bp)

>U35_17339 828 Hv_44K_v2
GGCTAAGCAGATGAAGCATTTCCTGAAGCTTGGCACTCTGATGCGGCATCAATCCCTGGC
GATGGCCTTGCAAGTATTAGATCAAAAGTTTATCTTACTCCCAAGCTTTGGTATCTGCGT
GTCAATGTCATTGAAGCACAAGATCTTATACCAAATGACAAGACCAGATTCCCTGAGGTT
TACGTCAAAGCAATGTTAGGAAACCAGGCTCTTAGAACCCGAGTATCACCAGGCAGGACT
CTGAATCCAATGTGGAATGAGGACTTGATGTTTGTTGCAGCTGAGCCGTTCGAGGAGCAC
CTGATTTTGAGTGTAGAAGACAGGATTGCTCCAGGCAAGGATGATGTAATTGGGAGAACT
GTCATTTCACTGCAGCATGTAGCTCGGAGGCTGGACCACAAGTTGCTGAACAGCCAGTGG
TATAATCTTGAGAAGCATGTGATGGTGGATGGCGAACAGAGGAAGGAGACCAAGTTCTCA
AGCAGGATTCACTTGAGAATTTGTCTTGAAGGTGGATATCATGTCTTGGATGAATCGACG
CATTACAGTAGTGATCTAAGGCCAACTGCCAAACAGCTGTGGAAGCATAACATTGGGGTC
CTTGAGCTGGGTATCTTGACTGCGCAGGGCCTGTTGCCTATGAAGACGAAGGATGGTCGA
GGCACGACTGACCCTTATTGTGTTGCTAAGTATGGGCAGAAATGGGTGCGTACAAGGACT
ATCATTGATAGTTTCACTCCCAAGTGGAACGAACAGTACACTTGGGAAGTTCATGATCCA
TGCACTGTGATCACTATTGGTGTATTTTGACACTGCCACTTGAATGGT

Homology of Contig U35_17339 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g30750.4	775	0.0	protein\|anthranilate phosphoribosyltransferase, putative, expressed
Brachypodium v1_2	Bradi1g35960.1	775	0.0
Arabidopsis v10	AT3G57880.1	773	9e-165	Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein \| chr3:21431198-21433519 REVERSE LENGTH=773