barSeed - Barley Seed Development Database

Probe CUST_40554_PI390587928

Source Contig U35_17340

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40554_PI390587928	Hv_44K_v2	GATCCTTTCCAGTTAACGACTGAAACTCATGATGTGTGATTAGTTATTATGCATGTATTG	1237	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248690.1	3053	2e-24	2990 - 3049	100	60 / 60	plus	ABC13100
MLOC	MLOC_64185.1	3162	2e-24	93 - 152	100	60 / 60	minus	ABC13100
JLOC1	JLOC1_42112.1	3452	8e-25	3113 - 3172	100	60 / 60	plus
Harvest21	ABC13100	737	3e-25	23 - 82	100	60 / 60	minus	ABC13100
Harvest35	U35_17340	1339	3e-25	1238 - 1297	100	60 / 60	plus

Contig Sequence (1339 bp)

>U35_17340 1339 Hv_44K_v2
GTGATCACTATTGGTGTATTTGACAACTGCCACTTGAATGGTGGGGAAAAGGCCAATGGT
GCACGGGATACCAGAATTGGGAAGGTCCGCATCCGCCTCTCAACTCTAGAAACTGATCGG
GTGTATACCCACTCATACCCTCTTATTGTTTTGACACCTGCTGGCGTTAAGAAAATGGGT
GAGGTACAGCTTGCTGTCCGGTTCACATGCTCATCACTGCTCAACATGATGACTCTGTAT
TCACAGCCCTTGCTGCCCAAGATGCACTATGTACACCAGTTGTCTGTGATCCAGGTTGAT
AACCTAAGGCGCCAAGCAACCAACATTGTCTCAACAAGGCTGAGCCGTGCAGAACCACCA
CTGCGAAAAGAAATTGTGGAGTACATGCTGGATGTGGATTCTCACATGTGGAGCATGAGA
AAGAGCAAGGCAAACTTCTTCCGTATCATGGGTGTCTTGAGCCCTCTGATTGCAGTTGCT
AGATGGTTTGATCAGATCTGTCACTGGAGGAACCCACTGACGACTATACTGATCCATGTC
CTCTTTGTGATACTGGTCTTGTATCCTGAGCTGATACTGCCTACAATCTTCCTCTACCTA
TTCCTGATTGGAGTGTGGTATTACCGCTGGCGGTCGAGGCAGCCTCCGCACATGGACACT
CGCCTCTCACATGCGGAGACCGCCCATCCTGATGAGCTTGATGAAGAGTTTGACACCTTC
CCTACATCTCGCCCACCTGACATCGTAAGGATGCGGTACGACCGCCTCCGGAGCGTCGCT
GGGAGGATCCAGACTGTTGTTGGTGATCTTGCAACACAAGGAGAGAGGCTGCAGTCTCTG
CTGAGCTGGAGAGACCCGAGGGCCACCGCACTGTTTGTGACCTTCTGCTTCATCGCTGCG
ATCGTCCTGTACGTCACACCGTTCCGTGTTGTGGTTTTCCTTGCAGGCCTGTACACCCTG
AGGCACCCGAGGTTCCGCCACAAGATGCCGTCTGTTCCGCTGAACTTCTTCAGGAGGCTG
CCTGCAAGGACCGATAGCATGCTGTAAGGTGCAACCGTCTCTCTCGCTTCGCGATCCAGC
GCCTTACTTGTTTCGGTGGCTCGATGCCTAGCATGTTCTATAGCTGCAACTGAGATGATG
ATGGGGTCGACGCGTGGTTGCCGAAAAATTGAACTGAACTATGTCGTTGTTTGTAGCCTT
TTCCGTTGCCTGTATGTCTGTGTTTTAGGATGGTTTTGATCCTTTCCAGTTAACGACTGA
AACTCATGATGTGTGATTAGTTATTATGCATGTATTGTGCCAAAAAAAAAAAAAAAAAAA
GGAAAAAAAAAAAAAAAAA

Homology of Contig U35_17340 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os05g30750.4	775	protein\|anthranilate phosphoribosyltransferase, putative, expressed
Brachypodium v1_2	Bradi1g35960.1	775
Arabidopsis v10	AT3G57880.1	773	Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein \| chr3:21431198-21433519 REVERSE LENGTH=773