barSeed - Barley Seed Development Database

Probe CUST_40544_PI390587928

Source Contig U35_31639

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40544_PI390587928	Hv_44K_v2	ACAAGCGTTGTGCTGCTAGGCGAAGCGGTTGAGTGCCGCACCCTAGATGGCTAAAGTCAA	77	GeneList: darkmagenta MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.504	4.566	1.353	0.794	0.687	0.586
Raw	230806.666	212597.666	65437.867	56987.300	18079.033	17332.433

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
Harvest21	ABC53056	419	4e-24	254 - 311	100	58 / 58	plus
Harvest21	ABC27063	681	4e-24	267 - 324	100	58 / 58	plus
Harvest21	ABC02154	496	4e-24	270 - 327	100	58 / 58	plus
Harvest21	ABC53049	355	2e-22	246 - 303	98	57 / 58	plus
Harvest21	ABC41800	113	2e-22	55 - 112	98	57 / 58	plus
Harvest21	ABC41751	286	2e-22	165 - 222	98	57 / 58	plus
Harvest21	ABC53051	452	8e-21	254 - 305	100	52 / 52	plus
Harvest35	U35_31639	338	3e-25	78 - 137	100	60 / 60	plus
Harvest35	U35_28281	681	4e-24	267 - 324	100	58 / 58	plus
Harvest35	U35_503	994	4e-24	93 - 150	100	58 / 58	plus
Harvest35	U35_451	1864	4e-24	200 - 257	100	58 / 58	plus
Harvest35	U35_419	2235	4e-24	488 - 545	100	58 / 58	plus
Harvest35	U35_151	562	4e-24	83 - 140	100	58 / 58	plus
Harvest35	U35_31699	448	1e-23	286 - 342	100	57 / 57	plus

Contig Sequence (338 bp)

>U35_31639 338 Hv_44K_v2
CAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAGCCTAAACCGTGAAAACGG
GGTTGTGGGAGAGCAATACAAGCGTTGTGCTGCTAGGCGAAGCGGTTGAGTGCCGCACCC
TAGATGGCTAAAGTCAACGACCACCAGCGCCTCCTACTGTCACTGCCAGCCTCAGCTCAC
TCGAAGCAAGGCTAGCTAGCTAGCACGCAGCGAGCGATGGCGGCCGCGGCGACCATGGCG
CTCTCCTCCCCGGCGATGGCCGGCACCCCGGTGAAGGCCTCCAGGGCGGCGCCCTTCGGC
GAGGGCCGCATCACCATGCGCAAGACGGCGGGCAAGCC

Homology of Contig U35_31639 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None