barSeed - Barley Seed Development Database

Probe CUST_40540_PI390587928

Source Contig U35_17348

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40540_PI390587928	Hv_44K_v2	GGTGTGTCCCAAGCTGTAAGCCATCACACATTCAAAGCTGAAGCCTTCCTTTTCAAAAAA	2164	GeneList: salmon MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.596	4.274	1.126	0.794	0.497	0.566
Raw	77.384	94.883	22.010	26.812	3.450	5.615

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_44452.1	3150	3e-21	36 - 89	100	54 / 54	minus	ABC07973
JLOC1	JLOC1_28813.1	3426	2e-21	2978 - 3031	100	54 / 54	plus
Harvest21	ABC07973	2235	3e-25	2165 - 2224	100	60 / 60	plus	ABC07973
Harvest35	U35_17348	2235	3e-25	2165 - 2224	100	60 / 60	plus

Contig Sequence (2235 bp)

>U35_17348 2235 Hv_44K_v2
GGCTCATGGATACTGATCTGGACACAACTCAGCAAGACTATGTTAGAACAGCCCAAGCCA
GTGGAAAAGCTTTAGTGTCCCTCATAAACGAGGTTCTTGATCAGGCGAAGATAGAATCTG
GCAAACTCGAGCTTGATGCAGTGCCCCTTGATGTTAGACTAGTCTGTGATGACATCTTGT
CTCTCTTCTGTGGAAAAGCTCAGGAGAAAGGGCTGGAGTTGGCAGTGTATGTCTCTGATC
AAGTTCCACAAACACTTATTGGCGATCCGAATAGAATGAGGCAAATCATTACAAATCTCA
TGGGAAACTCCATAAAATTTACAGAAAGAGGACATATCTATTTGACGGTTCATGTTGTCG
AAGAGGTGATGTGTTCTTTAGATGTGGAAACGGAAATTCAAAACACATACAACACCTTAA
GTGGCTGCGAAGTAGCTAAAAGAAGGCTTAGTTGGCAGAGCTTCCGACTTTTCAATATGG
ATCTACACTCGTCCGAGTTGCCCTTTGCTCCCATCATGCCTGAAACGATAAGATTGATAA
TATCAGTTGAAGATACTGGTGTCGGCATCCCGCTTGAAGCCCAATCCCGCATATTCACGC
CTTTCATGCAGGTTGGTCCGTCCATTGCCCGCATCCATGGGGGCACTGGCATCGGATTGA
GCATCAGCAAGTGCCTGGTTCATCTCATGAAGGGGGAGATTGGGTTTGTAAGCAAACACC
ATGTTGGTTCTACGTTCTCCTTCACTGCAGTACTTTCGAGGGCACGCCCCAATGCAAATG
TCAACAAATCACCAGGGTTTAAAGGGGTCAGTGCATTGGTAGTTGATCATAGGCCGGTTC
GTGCCAATGTTACCAAGTATCATTTACAAAGGCTTGGAGTCAAAACGGAATTGACCAATG
ATGTAAGCCAGGTTATTCCTAAGATGAACTGCGCATCACTAGTTACAAGGCTAGTGCTAG
TTGACAAGGAGACCTGGCTTAAGGAATCCCATTCAATGCCTCAATTGCTTAGCAAATTGC
GGAGCAAAGATCAGTCAGACCCTCCGAAGGTCTTTCTTTTGGAGAACCCTACGAATTCTA
TCAAGAGCAGTTCAAATATATCCAGGGAGCATAACTTGAATGTAATCATGAAGCCGCTTC
GTGCAAGTATGCTTGAGGCCTCACTAAGGCGGGTTTTGGGTGGAGTAGATAAGGCGCATG
TCAAGAATGGACTGGTTGGCAACTCAGCGTTGGGTAGCCTTCTTCACAAGAGGAAAATCA
TTGTGGTTGACGACAACGCTGTGAACCTTAAAGTGGCTGCTGGTGCTCTCAAGAAGTACG
GGGCAGAAGTAATTTGCGCAGACAGTGGGAAGAAAGCAATTGCATTGCTAAAACCACCTC
ACAGTTTTGATGCTTGTTTCATGGACATACAAATGCCAGAAATGGATGGGTTTGAAGCCA
CCAAGAGAATCAGAATGATGGAAAGAGAGCTAAATGAGCGGGTAGAACGCGGAGAGGCTC
CACCAGAATGTGCTAACGTTAGGAGGTGGCGAACTCCGATACTGGCAATGACAGCAGACG
TTATCCAGGCAACATATGAGCACTGTTTGAAATGTGAAATGGATGGCTATGTCTCCAAGC
CATTTGAAGGGGAGCAGTTGTACAGAGAAGTAACTCGATTTTTCCAAAATCATGACCATG
TTCAGTAGGTAGGTCTATATGGAGTGTAAATTAGCAGAGGATGTCGCGACACAGCTCATG
GCATGGCGCGGAGGAGTTTGTTGAAGCTGCAGTGCTCCCAAGAGTACGAGCTTTGAAAAA
ATACCTGGAGATGGAGCCACCCAGGCTCTGTTTCTTCTTGGTACACCATCCCACCAAGAG
GCAAAGAAAAAAGGTGTGAAGCTCTTGAAACAGGGATGCAGATGCACGATGCGGCATTTT
GTTGAGCAACTTCCTGGAGATGGTTCGCGTGAAAAAAAGGCCGCCAACCGCATACGCTAG
CCGCAGGTTCCGGTTCGACCGACGTCCTCCGCCTTTGTAATGTAAATGTAAAATGTAGGG
AGAGAAAGTTTTTTCCTTTCCTTTTTTCCTTCTTCCCGGGGAATCGCATGGGTGTACATA
GTGAGGTGTTTGGTGGTTTGTGCAGGAATTTCCCTTTTGTGCATTTGAATGTGTTTTTTT
GCGCGGTGTGTCCCAAGCTGTAAGCCATCACACATTCAAAGCTGAAGCCTTCCTTTTCAA
AAAAAAAAAAAAAAA

Homology of Contig U35_17348 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g69920.2	867	protein\|histidine kinase, putative, expressed
Brachypodium v1_2	Bradi2g59127.1	1021
Arabidopsis v10	AT1G27320.1	1036	\| Symbols: AHK3, HK3 \| histidine kinase 3 \| chr1:9487780-9492027 FORWARD LENGTH=1036