- Probe CUST_40523_PI390587928
- Source Contig U35_29327
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_40523_PI390587928 | Hv_44K_v2 | GGTGTCCTGCTATGTGACTTCTCCGAAAATACAGACTCCCCGTCGCTCTGCTACGTGCCT | 352 | GeneList: lightsteelblue1 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 9.965 | 4.609 | 1.620 | 0.530 | 0.444 | 0.262 |
| Raw | 351.701 | 213.716 | 77.566 | 38.175 | 11.838 | 7.859 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_44397.1 | 753 | 2e-24 | 381 - 440 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_31922.1 | 1377 | 3e-21 | 793 - 852 | 97 | 58 / 60 | plus | None |
| JLOC1 | JLOC1_20906.1 | 1261 | 2e-21 | 707 - 766 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC28579 | 412 | 3e-25 | 353 - 412 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC48188 | 652 | 6e-22 | 178 - 237 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_29327 | 412 | 3e-25 | 353 - 412 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_47289 | 652 | 6e-22 | 178 - 237 | 97 | 58 / 60 | plus |
Contig Sequence (412 bp)
>U35_29327 412 Hv_44K_v2 GAGTTGCTACCGGGCGCCCCCAGGCAGATCTGCTCGTCTAAAAGGCCAGCGGTCCTCGCC CCTCGGTGCAGCGTCTCCCTCCCTACGTCGAGTACAGTAGAAGGCCGTTCCTGAAGAACT AAGCATCCTGCAGCTCGAAGGGGGCCGCTACATCGTCGCCGACCTCAATGTCTACCACAA AAAGAAGCGCATGCGTGCCGAACTGTGCGTCTTCAACTCCGAGACTGGAAAGTGGAAAAT CATCCGCAAATTGGACCCAGCAGGCAATTGCGGCCAGTTGCGCGGACTCTGGTCAACCCA CAACGTGCTCGCCTTCGACGGCCGTTTCCTCTGCTGGGTCGACTACTTCAGCGGTGTCCT GCTATGTGACTTCTCCGAAAATACAGACTCCCCGTCGCTCTGCTACGTGCCT
Homology of Contig U35_29327 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |