barSeed - Barley Seed Development Database

Probe CUST_40522_PI390587928

Source Contig U35_29328

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40522_PI390587928	Hv_44K_v2	AAATCATCAGTTATAATCGTCGCGTCGTTCGATTGCTATATGATGGCGGAGACCAAAGCG	13	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68812.1	945	7e-23	869 - 928	98	59 / 60	minus	ABC03050 ABC03051
MLOC	MLOC_68812.2	938	7e-23	736 - 795	98	59 / 60	minus	ABC03050 ABC03051
JLOC1	JLOC1_45564.1	854	4e-23	49 - 108	98	59 / 60	plus
Harvest21	ABC28580	192	3e-25	14 - 73	100	60 / 60	plus
Harvest35	U35_29328	192	3e-25	14 - 73	100	60 / 60	plus

Contig Sequence (192 bp)

>U35_29328 192 Hv_44K_v2
GAAACCTTCTCTAAAATCATCAGTTATAATCGTCGCGTCGTTCGATTGCTATATGATGGC
GGAGACCAAAGCGGTGGCTGGTGCGGCGGAAGCGGGCCCGGCGGAGGAGGGGAGGAGGAA
GACGGTGGTGCTGGTCGCCGTGGACGACAGCGACCACAGCTACCGCGCGCTCGAGTGGGC
CGTGCGGCACGT

Homology of Contig U35_29328 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None