barSeed - Barley Seed Development Database

Probe CUST_40510_PI390587928

Source Contig U35_17354

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40510_PI390587928	Hv_44K_v2	TCATGGCTTCATGTGCATCACACGTTCTGTAAACGATCAACCAACGGAACATGGCTTTCA	2021	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.027	1.659	1.040	0.969	0.514	0.440
Raw	35.816	49.199	25.508	37.592	6.887	6.407

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_3399.2	2139	4e-23	2058 - 2118	98	60 / 61	plus
JLOC1	JLOC1_3399.1	1816	4e-23	1735 - 1795	98	60 / 61	plus
Harvest21	ABC07597	2081	3e-25	2022 - 2081	100	60 / 60	plus	ABC07597
Harvest35	U35_17354	2081	3e-25	2022 - 2081	100	60 / 60	plus

Contig Sequence (2081 bp)

>U35_17354 2081 Hv_44K_v2
GTCCTACAAGTACTCCGCGCACCGGCGTTCGCCGGAGAATCTCCCCGCCGGACGCCGCCA
TGCCGCCGCCTCTCCAGGCCCACCGCATGCTCCTCTCCCATCGCCGCACATCCCCCATCC
CTCGTCGCCGCTTCACCGCGGTCTCCTCCCTCTCCTCCGCCCCCGCCAAGACCCTGGCCC
CGGGCCCGACCCCCTCCTCCATCCTCTCCATCCGCGAGTCGCTCCTCTCCGGCGAGAGGA
CCGCGGCCGACATCACCTCCGAGTACCTCTCCCGCCTCCGCCGCACCGAGCCGAGCCTGC
GCAGCTTCATCCACGTGGCCGACGCCGCCGCCGAGCGGGAGGCGGAGGAGCTCGACCGGA
GGATTGCCTCGGGTGGGCAGGATGCGGTGGGACCGCTCGCCGGGGTGCTCGTGGGCGTCA
AGGACAACCTCTGCACCGCCAGCATGCCCTCCACCGGCGGGTCGCGGATACTCGACGGGT
TCCAGCCGGCGTACGACGCCACGGCCGTGCGGCGGCTGCGAGAGGCGGGCGCCATCGTGG
TGGGGAAGACTAACCTCGATGAGTTCGGCATGGGGAGCACCACCGAGGGCTCTGGGTTTC
AGGTGACCACAAACCCTTGGGACGATTCGCGCGTGCCTGGGGGATCCTCAGGTGGTTCTG
CTTCTGCGGTTTCTGCTAGACAGTGTGTGGTGTCCTTAGGGAGTGACACAGGTGGAAGTG
TGAGGCAACCGGCATCGTTTTGTGGTGTGGTAGGGTTAAAGCCAACTTATGGCCGGGTAT
CTCGTTTTGGCCTCATGGCTTATGCTTCATCACTGGATGTTGTGGGATGCTTTGGATCAT
CAGTTTTTGACACTGCAACCATATTGTCTGTCATTGCTGGCCATGACAAAATGGATTCAA
CCAGCAGCTCTCATGATGTTCCAGACTATAGATCAGACTTGGCATCTCTAAGTTTACTAG
AATCAAAACCATTAAATAATGTGAGAATTGGGATTATCCAAGAAACTCTTGGAGAGGGTG
TGGATGCTGGAGTCATATCATCAATCAGGGCTGCTGCTTCGCATCTGGAACAGCTAGGAT
CGGTGGTGGAAGAGGTTTCGATGCCTTCATTTTCTCTTGGCTTGCCAGCATATTACATAT
TGGCCTCTTCTGAAGCCTCATCTAATTTGTCACGCTATGATGGCATCAGGTATGGGCGGC
AGGTTTCGGCTGATGACTTGAATGAGCTCTACGGAAATTCCCGGGCTAGTGGTCTCGGTC
ATGAGGTCAAAATGAGAATTTTGATGGGAACTTATGCATTATCTGCTGGATACTATGATG
CATACTACAAACGAGCGCAACAGGTGAGGACGCTGGTTAAGAAAAGCTTCGAAGAAGCTT
TGGGCAAATACGATATTCTTATTTCACCTGCTGCTCCATCAGCAGCCTACAAGATAGGTG
AAAAGACAAATGATCCATTAGCTATGTACGCCGGAGACATCATGACGGTGAATGTTAACA
TGGCTGGGCTTCCTGCATTGGTTGTGCCTTGTGGATTCGTCGAAGGTGGGTCTGCGGGTC
TCCCAGTCGGACTTCAGATGATCGGATCTCCCTTCAGTGAGGGGAATTTGCTGAGAGTAG
GCCACATCTTCGAACAAACGCTGCAGGATCTCAGCTTCGTTCCACCACTGGCGGCAGATA
ACTAGCGCCTTTCTTCGTGTCTCGTTCAAGCGGTTCCTAGGGCTGCGTGGGTTTTAGAGG
CCCCTCTTTTCATTCATTCCTAAAGTTTTGAGATATATTATTTCGTCGTTGTATGGCGAG
GAAACTGGTTGTACGCAATGCGTGAGATTTCCCATTGTGGGAGTGGTTGGGGACAGAGTC
TGAGACGGCATGTGCACATGTGCAATTCCTGCAAGCCAACAGCTGCGTCGCCCACATTCG
GTATCGGCCCACGTCGATGGTATATTTTTTGTAATCCTGGTTCACATCAATGGTATTCTG
CAAATCTTTTTGATAAAAAAAAAAAAAAAAGTGCAGGCTATTCATGGCTTCATGTGCATC
ACACGTTCTGTAAACGATCAACCAACGGAACATGGCTTTCA

Homology of Contig U35_17354 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os04g55050.1	486	protein\|amidase, putative, expressed
Brachypodium v1_2	Bradi5g23667.1	543
Arabidopsis v10	AT3G25660.1	537	Amidase family protein \| chr3:9339640-9342044 REVERSE LENGTH=537