barSeed - Barley Seed Development Database

Probe CUST_4050_PI390587928

Source Contig U35_25355

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4050_PI390587928	Hv_44K_v2	CTATATTCCCGCTCTCTACCTGCTTCGTTTTAATATATGCCAGCCAGCAGCTGGATCTTA	372	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.442	1.245	1.168	0.658	0.290	0.266
Raw	361.365	452.397	405.384	352.609	55.835	56.198

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372440	5757	6e-24	5044 - 5102	100	59 / 59	plus	ABC32836 ABC38449
MLOC	MLOC_27559.1	739	6e-24	641 - 699	100	59 / 59	plus	None
JLOC1	JLOC1_18602.1	739	3e-24	641 - 699	100	59 / 59	plus
Harvest35	U35_25355	1102	3e-25	373 - 432	100	60 / 60	minus

Contig Sequence (1102 bp)

>U35_25355 1102 Hv_44K_v2
TGTCGCGTGCAAGCCACGCTCCAAGTTTGGGGATTACCCTGTTGAGAGATGCCTCAAGCA
GATGGACCGTGCCTTCAATTTCGGGGACAACCAGGTCTTGCACATGTATGGGTTTGAGCA
CAAGTCTCTTGCGAGCAGGAGGATCAAGAGGATCAGGAATGAGACCAGTAACCCTCTTGA
TATGAAGGATGATTACGGGTTGCTCCACCCAGCATTCAAGGCCGTCAAGACTGCTACAAC
GTGATAACTATAGTACACTACGTCCACGTTTACTTTGTTCGTTCGTTCTAGATTCTCTTG
GATCAAAATCCTATAATTGTTCTTTTTTGTAGAATCAGGGTAACAAGGAAATTTGGTTTT
GGTAGCGGCCGCTAAGATCCAGCTGCTGGCTGGCATATATTAAAACGAAGCAGGTAGAGA
GCGGGAATATAGCAAGGTGGTGGCGATCCATGACGGATCAAAGGAAAAAATCAGAAGAAA
CAAAAAAGAATAAGATACATCCGTCCCCGAAGGGAAAGCCCACTACGTGACTACTCCCGT
TTGCTCCCCGAAGGGGTGCACGAGGCAGGCCGCTCCTGCCTGCCTCCAAAGCTCCATGGT
ATCCTGTATGGAATTCGTTATGTTTCTGACGGCGGGAGTCTTCAGTCTGAAGGTGCAGTC
GTTCCTGTCCTTCCAGATTTGTGCTAAAATAAGCACAATCATAGTCCTAATCCCTTTCTT
GTGCTCTGGCCTGGCTTTGCTTATCATGTCCATTATGATATCGTGTGGTGTGTTCCTGTG
TTTCCATACCGCTGGGTTAAGCGAGACACAGCCGTGTCTAGCCGACGACAGTAACCATAC
CTCAAGCACCTTCGTACATTGCCAGAACAAGTGATCGGCCGTTTCCAGATTTCGGAGGCA
GAGTTGGCAAAAGTACCCGTTTGGCCATCCCCTCCTCTGCAGGCGGTCGTTGCACCATAG
CCTGTTCCGCAATAGCAGCCAGTAAAAGATTTTTAGTCTAGCAGGTGCCCAAGAAGCCCA
GATCAGCTTTCTAAAGGGTGATCTTGTGTGCCCCTGGAACTGGGCCTTGTACGATGAGCT
AGCGGAGTATAGCCCTGACGCC

Homology of Contig U35_25355 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None