barSeed - Barley Seed Development Database

Probe CUST_4049_PI390587928

Source Contig U35_25357

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4049_PI390587928	Hv_44K_v2	CGTCCACCGGGGACGGCGACCGCTACGCGGCGGCGGAGCAAGGAGGTGATAGCGCGGGCA	390	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362300	2832	7e-23	396 - 455	98	59 / 60	plus	ABC12225
MLOC	MLOC_72174.5	2214	7e-23	448 - 507	98	59 / 60	plus	None
MLOC	MLOC_72174.2	2066	7e-23	451 - 510	98	59 / 60	plus	None
MLOC	MLOC_72174.4	1895	7e-23	449 - 508	98	59 / 60	plus	None
MLOC	MLOC_72174.1	2096	7e-23	451 - 510	98	59 / 60	plus	None
MLOC	MLOC_72174.3	2038	7e-23	451 - 510	98	59 / 60	plus	None
JLOC1	JLOC1_48010.4	2014	4e-23	441 - 500	98	59 / 60	plus
JLOC1	JLOC1_48010.3	2008	4e-23	441 - 500	98	59 / 60	plus
JLOC1	JLOC1_48010.2	2019	4e-23	441 - 500	98	59 / 60	plus
JLOC1	JLOC1_48010.1	2003	4e-23	441 - 500	98	59 / 60	plus
Harvest21	ABC23410	448	4e-24	391 - 448	100	58 / 58	plus
Harvest35	U35_25357	450	3e-25	391 - 450	100	60 / 60	plus

Contig Sequence (450 bp)

>U35_25357 450 Hv_44K_v2
CAGCTCGTCCTCTGCCTTCGTCTGTTCCTCATCTCCCCGCCTCACTCCGCCCCCTCCCCC
CATCGATTCCTCCACGCGAGGTCCTCGGGCTGCCCCCGTCCCCCCGGTCGCGAATCTAGG
GTTCGGGGCGCGCCTCCCCTCCCTCTCCCATGGCCTCCGCCGCCGCCGAAACCCTTGTCT
CGCTCCCCGTCGTGCCCCCCTCCCGGTCGCTCCTCCGCCCCCTCCGCAGGCGACCTGCTT
ACAGAGGCAGCGCCGCGTCGGTCCGCCTATCCGCGGTGCCGTCCCGGGGCCTTGGGTTCG
CCCTCATCCATCGGCGCATTCGCTGCCCGCCGGCGGCGCGCGCCAACGTCGAGCGCGACG
GCGACGGCGCCTTCGGGTCGGGAGAGGCCTCGTCCACCGGGGACGGCGACCGCTACGCGG
CGGCGGAGCAAGGAGGTGATAGCGCGGGCA

Homology of Contig U35_25357 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None