- Probe CUST_40493_PI390587928
- Source Contig U35_43627
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_40493_PI390587928 | Hv_44K_v2 | CCGCTTCGTCGGCCACGAGAAGGACGTCCTCTCCGTCGCCTTCTCTATTGACAACCGACA | 210 | GeneList: orange MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.756 | 0.813 | 2.298 | 2.223 | 1.010 | 0.778 |
| Raw | 488.826 | 807.016 | 2038.707 | 3103.827 | 509.097 | 419.923 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_54589.1 | 1564 | 2e-24 | 649 - 708 | 100 | 60 / 60 | plus | ABC01023 ABC01031 ABC43064 ABC49901 |
| JLOC1 | JLOC1_35141.1 | 1532 | 8e-25 | 575 - 634 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC40528 | 270 | 3e-25 | 211 - 270 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01023 | 1513 | 3e-25 | 597 - 656 | 100 | 60 / 60 | plus | ABC01023 |
| Harvest35 | U35_43627 | 270 | 3e-25 | 211 - 270 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_590 | 1326 | 3e-25 | 417 - 476 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_588 | 512 | 3e-25 | 417 - 476 | 100 | 60 / 60 | plus |
Contig Sequence (270 bp)
>U35_43627 270 Hv_44K_v2 CCACAACGACGTGGTCACGGCCATCGCGACACCCATCGACAACTCGCCCTTCATCGTCTC CTCTTCCCGCGACAAGTCGCTGCTCGTCTGGGACCTCACCAACCCCATCCAGGCCACCCA GGACACCAGCTCCGACGGCCAGTTCGCGCTCTCCGGATCCTGGGACGGCGAGCTCCGCCT CTGGGACCTCTCCACCGGGGTCACCACCCGCCGCTTCGTCGGCCACGAGAAGGACGTCCT CTCCGTCGCCTTCTCTATTGACAACCGACA
Homology of Contig U35_43627 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | Bradi2g46840.1 | 332 | 3e-51 | |
| Arabidopsis v10 | None |