barSeed - Barley Seed Development Database

Probe CUST_40472_PI390587928

Source Contig U35_23225

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40472_PI390587928	Hv_44K_v2	TTGATTTCAGTCTCACCCAATACAGTGATGCCCCAAGGATGCCTTGCACATGACCTTATT	971	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.122	1.220	1.323	0.956	0.497	0.511
Raw	198.441	306.506	311.984	353.536	63.720	72.681

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54602.1	2222	2e-24	1094 - 1153	100	60 / 60	plus	ABC19788
JLOC1	JLOC1_35153.1	2189	8e-25	1081 - 1140	100	60 / 60	plus
Harvest21	ABC18054	1035	3e-25	972 - 1031	100	60 / 60	plus
Harvest35	U35_23225	1035	3e-25	972 - 1031	100	60 / 60	plus

Contig Sequence (1035 bp)

>U35_23225 1035 Hv_44K_v2
TCCCCTTCCTCCTCCCGCTCCTCCCCTTTCAAATCCTCTCCCCTCTCCCTATAAACCTAG
GGGAGGGAGCGGCCGCAGACCACTCCCAGAGCCCAGATCTATCTGGCCCCTCTTCGATCG
CCCCGGCTTCCTCGTCCATGGCGACTCCGCCGTCGCCGCCGCCGCCCACGCGCGCCTCCT
GCGGCTCCTTTCTCCAGGAACTGCAGGAATTATGGGGAGAAATAGGCCCGGATGAACTAG
AGAGAGATAGGATGATCTTGCAATTGGAGGAGGACTGCCTCAATGTTTACAGGAAGAAAG
TGGAACAAACTAGAAAGCAAAAGACAGACCTGCTTCAAGTGATGTCCTTGGGTGAAGCCG
AGATAGGAAAGATCCTTTCTGCTCTAGGAGAGCGTGAATCCTTTTCCAGGGCGGAGAAGC
TTGGGGGTACATTAATGGAACAACTTGCAAAACTGGAACCAGTTCTGGACGATCTGAGAC
GGCGGAGAGACGAGCGCATAAATGAGTTTTTGGCTGTTCAGCTGCATATTGTTCGTCTAC
AAGCTGAGATTTCAGGAACCATTAATCACGGGGATCCTGCAGCTCCTTTAGTGGATGAGA
CTGACCTATCTACAGGAAGACTGGCTGAACTGAAAACTCAGCTTAATGAGCTCCAGACAG
AAAAGAATCTCAGACTGCAAAAGATTGATGGTCAGATCAAGTGTATTAATGAAATGTGCA
ACATGATGTCTCTTGATCTTAAGAAGACATTATATGAAGTCCATCCCAGCTTTGTTGAAT
TGGAAAGAATCAAAGCCATGAGTATAAGTGATAGCACACTTGATAGGCTTGCAGGAAAAG
TTCATGCACTAAACCAAGAAAAGAAACAGAGGCTCCGGAAGCTACAAGATCTTGGAAGCA
CACTCATTGAGTTATGGAGTCTAATGGACACACCATTACATGAACAGAAATGCTTTGATC
ATGTTACTTCTTTGATTTCAGTCTCACCCAATACAGTGATGCCCCAAGGATGCCTTGCAC
ATGACCTTATTGAGA

Homology of Contig U35_23225 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g33890.1	571	1e-145	protein\|microtubule associated protein, putative, expressed
Brachypodium v1_2	Bradi2g25500.1	577	2e-162
Arabidopsis v10	AT4G26760.1	578	3e-70	\| Symbols: MAP65-2 \| microtubule-associated protein 65-2 \| chr4:13478834-13481300 REVERSE LENGTH=578