- Probe CUST_40468_PI390587928
- Source Contig U35_23229
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_40468_PI390587928 | Hv_44K_v2 | TGCTTAGGAGTTATTTTCCCAGATTTCTCTCCACCGTTTTGTTAGCCCGTGTGCTTTTTT | 383 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 3.291 | 3.632 | 1.308 | 0.603 | 0.185 | 0.220 |
| Raw | 1203.065 | 2069.856 | 638.570 | 479.582 | 50.365 | 63.991 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_58725.1 | 1873 | 2e-24 | 227 - 286 | 100 | 60 / 60 | minus | ABC02157 ABC17127 |
| JLOC1 | JLOC1_38175.1 | 1833 | 8e-25 | 1541 - 1600 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC17127 | 490 | 3e-25 | 384 - 443 | 100 | 60 / 60 | plus | ABC17127 |
| Harvest35 | U35_23229 | 490 | 3e-25 | 384 - 443 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_34361 | 815 | 1e-23 | 188 - 247 | 98 | 59 / 60 | plus |
Contig Sequence (490 bp)
>U35_23229 490 Hv_44K_v2 GGAGTACCGCCCCGCCGCGAGCCCGACGTTCGTGACGTCGAGGCACTCCAACTCCCACCG CAAGGTGCTGGAGCTCCGCCGGCAGAGGGAGATGCACCACCAGCCGTCGCAGCACCTGCA GCAGCACGTGGTCCCCGGCGGCGTCGGGAGGATAATGCACATGGAGAGCCACCTGCTGTT CGACGGGCCGGCGGCGCCGCCCATCATCGGCGGAGGCGACGACTTCTTGATCCACCACCG CCTAGGGACGACGGACTACCGGCAGCAGCTCATCTAGACGAGTCGTCAGTCAGTTAGAAC TGATCAGTTTAGCCCAGGAATAATGAAAAAAGCAGCTAAAACCCCAAGAACCGGCCGGAA ATATCGGAAGAACTGCAAATGTTTGCTTAGGAGTTATTTTCCCAGATTTCTCTCCACCGT TTTGTTAGCCCGTGTGCTTTTTTTTGTTCAGCTCGAAATTCTCGTGTCCGATTAAAAAAA AAAAAAAAAA
Homology of Contig U35_23229 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |