- Probe CUST_40460_PI390587928
- Source Contig U35_11250
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_40460_PI390587928 | Hv_44K_v2 | TATGTACACTTGGGACCTTCAGGGAATAAACGTTGCACCAGTGGGGGAAAATATCTTTGG | 7 | GeneList: saddlebrown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.236 | 0.240 | 0.606 | 1.955 | 1.608 | 1.875 |
| Raw | 177.104 | 272.945 | 663.143 | 3157.250 | 963.087 | 1203.124 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest35 | U35_11250 | 347 | 3e-25 | 8 - 67 | 100 | 60 / 60 | minus |
Contig Sequence (347 bp)
>U35_11250 347 Hv_44K_v2 GCACAAGCCAAAGATATTTTCCCCCACTGGTGCAACGTTTATTCCCTGAAGGTCCCAAGT GTACATATGGTCCAACGCCGAACCAACAAAAAATCTAGGTAGTACTATATATTGCAGGTA CAATGGAGCTTAAATTAGGAATTCTCAACTCTCTTTCCAAAAATCGACAACGAAAGCTTA TTACAGCGATGAAGTCGGAGCTGGTAGCAGGAAGTTGAGGAGAGCCTCGTTAAACTTCTT TGTGTCCTCCTCGTGCGGCATATGGCCAGTGTTCTTGAGGATCTCCAGCCTAACATTTGC ACCTAGCTGCCTCGTCACCTGGAATGCCTAGCGGCCGCTCGAGCATG
Homology of Contig U35_11250 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |