barSeed - Barley Seed Development Database

Probe CUST_40457_PI390587928

Source Contig U35_11253

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40457_PI390587928	Hv_44K_v2	TAAAACCCCAGACCTTTGCTGTGATCCAATTCCACCCCCGAAAATGGCAGCCCTCGCCTC	18	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58681.2	1486	2e-24	1403 - 1462	100	60 / 60	minus	ABC11636
MLOC	MLOC_58680.1	4980	2e-24	1993 - 2052	100	60 / 60	minus	ABC11636
MLOC	MLOC_58681.1	2078	2e-24	1995 - 2054	100	60 / 60	minus	ABC11636
JLOC1	JLOC1_38140.1	1954	8e-25	1868 - 1927	100	60 / 60	minus
Harvest35	U35_11253	491	3e-25	19 - 78	100	60 / 60	plus

Contig Sequence (491 bp)

>U35_11253 491 Hv_44K_v2
ACTCTGTCGCCCAAAACCTAAAACCCCAGACCTTTGCTGTGATCCAATTCCACCCCCGAA
AATGGCAGCCCTCGCCTCCCTTCTCCGCCGCCGCCGCCCCGACGTCCTCCTCCGCACGCT
CTGCGCCACCACCACTGCGCCCCCGCTCACATCCTCGGCCGCCAAGACCCGCCTCCGTCG
CGAGTACGACGCCGACCGCGCCGTCTCCCTCCTCGAGGCCATCGACACCGCCTCCCTCTC
CGCCGGCTCTACGCGCCATGCGCTCTCCCTTGCCGCACGCCGCCTCACGCGCGCCGGACG
GCTTGCTGATGCCGAGGCGCTCCTCTCCTCCCACATCCCAGCTTCCCCAACAGAGCCGCA
CCTCTCGGCCATCCTCTGCTCATACGCCTCCGCCGGCCTCCCCGAGAAGGCCCTCGAAGC
CTTCCGCTCCGCCGTGCCGTCCCTCCCGTCCCCCATCTCCTCAATGCCCTTCAACGCCCT
CTATCGGCCTT

Homology of Contig U35_11253 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None