barSeed - Barley Seed Development Database

Probe CUST_40443_PI390587928

Source Contig U35_23238

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40443_PI390587928	Hv_44K_v2	CTTATGTTCCCTTCTTTGGTAGGAAGATAAACCATGGACTGCTGCACTGATGGTTTTAAA	899	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.765	1.677	1.172	0.758	0.232	0.282
Raw	395.173	590.851	360.414	363.287	39.831	51.764

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356412	2998	6e-24	2861 - 2919	100	59 / 59	plus	None
JLOC1	JLOC1_36382.3	1844	3e-24	1610 - 1668	100	59 / 59	plus
Harvest35	U35_23238	969	3e-25	900 - 959	100	60 / 60	plus

Contig Sequence (969 bp)

>U35_23238 969 Hv_44K_v2
AATCTTTGGTCACTTACCTAACCACAATGCCAGCCATTCATTCGATGATCATTTTTGTCT
GCATCAAGTGGGTTCCTGTTCCTGTCGTTCCTCAGAATGAAAGGTTTCTCTTTCGCCGGG
TCTGCCCAAAGAACTACCATATGTTTCGCTGCATTGCTAGGTATGGGTACAAAGATGTAC
GCAAGGAGAACCCCCAAACATTTGAACAGCTTCTGATAGAAAGTCTAGAGAAATTTATAC
GGCGAGAAGCTCAGGAGCGCTCCCTGGAGAGTGATGAGAATGGTAACACGGACTCCGAAG
AGGAGGTTGGGTCAACCTCATCAAGAGTTCTTGTTGGTCCAAATGGTAGCATCTACTCTC
TTGGTGTTCCACTCCTTGCGGAGTCTGCTGGTGTTTCAAATCCGAACTTGGGATCAAGCA
CATCTTTTGATGGATCTCTGGACGGGACAATGGATGGAAGGCGAAGCCTGGACAATGAGC
TGTCTTTCATCCACAAGGCCAAGGAGTGTGGCGTCGTTTACCTTCTTGGACATGGCGACA
TCCGAGCTCGGAAGGAGTCATTTTTTGCCAAGAAGCTAGTGATCAACTATTTCTACGCGT
TTCTGAGGAAGAACTGCCGGAGAGGCATAGCAACGTTGAGCATACCGCACACAAGGCTGA
TGCAGGTCGCAATGCAATACATGGTGTAGGGTTGTTTTTACCCCAATTTTTCTCTCCGAT
GGCCAGGGTGCTAACTCGTGGTAGATAAGAGGGGCGAATGGCACTGTTTACTGGAGCTAC
TTTCATGCTATAGATTCACTATTTAGCGGGCATTAACAAAGGTACTGTTTACTGGAAGGC
TGTCGGAGACTGACCCGTTTAATGAAAACATGAAATCTCCGTTTCAACATTTTTGTCAGC
TTATGTTCCCTTCTTTGGTAGGAAGATAAACCATGGACTGCTGCACTGATGGTTTTAAAA
AAAGAAAAA

Homology of Contig U35_23238 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g32530.1	860	2e-118	protein\|potassium transporter, putative, expressed
Brachypodium v1_2	Bradi1g26560.1	851	3e-143
Arabidopsis v10	AT5G09400.1	858	2e-102	\| Symbols: KUP7 \| K+ uptake permease 7 \| chr5:2916377-2920604 FORWARD LENGTH=858