- Probe CUST_40439_PI390587928
- Source Contig U35_35213
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_40439_PI390587928 | Hv_44K_v2 | CGAGTTTAGTGTGGCTATATGTAATGGAATTGTCTGTTTCTAAATCCTCAATGAGAGATT | 317 | GeneList: sienna3 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 11.535 | 5.096 | 1.615 | 0.440 | 0.048 | 0.039 |
| Raw | 9681.093 | 6947.177 | 1822.107 | 769.573 | 32.087 | 26.972 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_47456.1 | 2569 | 7e-23 | 2479 - 2538 | 98 | 59 / 60 | plus | ABC05703 ABC13674 |
| JLOC1 | JLOC1_30598.1 | 2395 | 4e-23 | 2305 - 2364 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_35213 | 401 | 3e-25 | 318 - 377 | 100 | 60 / 60 | plus |
Contig Sequence (401 bp)
>U35_35213 401 Hv_44K_v2 TATAGGGCGAATTGGGCCCTCTCTCAAGATGCTCGAGCGGCCGCTGAGATGGCTAGCCTG ACGTTCGATGTCAGCCCATGCGAGCACTTGAGCAGGGCGAGGGAGGACGGCAAGATGGTG ATCGACAGAGCCTCACATTTCCTCTTTGTTGACGAGGATGAGGCCGAGATCAGCTTCGAC TCCTGAATTAAGTCTCCTTAGTTAGCCTATTTTTAGCAGGGTTAAAAGATGAACTCCAAT GCGAGTTGTTGCGGAGACACAATTAACCGATGCCTCGAAGAGCTAGCTAATTGTTCCAGC AACATCAAGAATGTTTGCGAGTTTAGTGTGGCTATATGTAATGGAATTGTCTGTTTCTAA ATCCTCAATGAGAGATTTTTACATGATAAATGAAATTCTTA
Homology of Contig U35_35213 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |