barSeed - Barley Seed Development Database

Probe CUST_40434_PI390587928

Source Contig U35_11260

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40434_PI390587928	Hv_44K_v2	ATTCATGGCCAACCAACTGAATGAATACCAACGTGTGGAAATTGTTGTTCAGGTCCGGAG	216	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59762.1	2934	2e-24	1429 - 1488	100	60 / 60	minus	ABC14020
MLOC	MLOC_59762.3	2470	2e-24	1400 - 1459	100	60 / 60	minus	ABC14020
Harvest21	ABC21478	489	3e-25	217 - 276	100	60 / 60	plus
Harvest35	U35_11260	491	3e-25	217 - 276	100	60 / 60	plus

Contig Sequence (491 bp)

>U35_11260 491 Hv_44K_v2
CTCCTCCCCAGCTTTCTTGAGAGGAGAGCAACGTGGGCAATGCCTCGGCCAGATTTCTAG
ACGGAATTCTAGACCCCTCCTGCGCGTTGATCATTTCATTTCGTGGTCTAGTGTATGTGT
CCTACACGAAGAATGCAGCTCTTGTCTGCTAAACTCTTGCAAGAAAAGATTTTCTTTGGG
TCCTTCACTTCTCCATGCCAATCATTTTTCCTGATCATTCATGGCCAACCAACTGAATGA
ATACCAACGTGTGGAAATTGTTGTTCAGGTCCGGAGGTGTCGACGGCGGCGAGGCGGGAG
TGGAAGCCGCTGTGCGACCTGACGTCGAACCGGCGCATCGACTGGTGCGAGCTGGACGGC
GACGTGCGCGTCCACGGCGCCCAGGGCACGGTCACCCTGGTGGGCACGGCCAAAGCCGAG
GAGTGGCGTGTCAAGCCGTACCCTCGCAAGGTCGACCCCAACGCCATGCGCCACGTGCGC
GAGATCGCCGT

Homology of Contig U35_11260 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None