barSeed - Barley Seed Development Database

Probe CUST_40428_PI390587928

Source Contig U35_11267

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40428_PI390587928	Hv_44K_v2	GGAGAAAGGGGTACTGAAAATTGCAGATCTTGGGCTAAGCAGAGCTTTTACAGTTCCCAT	530	GeneList: darkred MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.771	1.483	2.059	1.213	0.283	0.337
Raw	119.210	342.210	424.976	418.618	31.983	42.300

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7009.1	1503	2e-24	541 - 600	100	60 / 60	minus	ABC10982
JLOC1	JLOC1_4616.1	1584	8e-25	765 - 824	100	60 / 60	plus
Harvest21	ABC25287	590	3e-25	531 - 590	100	60 / 60	plus
Harvest35	U35_11267	590	3e-25	531 - 590	100	60 / 60	plus

Contig Sequence (590 bp)

>U35_11267 590 Hv_44K_v2
AGGGCAACCCAACCCCACCCCCTACACACCACATCACCTAGGGTTCCTTTNNTTTATCCA
GGTCGTGAACCCGAAGAAGCTCGTCGATCCATGGACAAGTACGAGAAGCTGGAGAAGGTG
GGGGAGGGCACCTACGGCAAGGTGTACAAGGCGCGGGTGGCGGCGACGGGGCAGCTGGTG
GCGCTCAAGAAGACCCGCCTCGAGATGGACGAGGAGGGGATCCCGCCCACCGCGCTGCGC
GAGATCTCCCTCCTCCGCCTCCTCTCCGCCTCCCTCTACGTCGTCCGCCTCCTCTCCGTC
GAGCAGGTCACCAAACCCTGCGGCAAGACCGTCCTCTACCTCGTCTTCGAGTTCCTCGAC
ACCGACCTCAAGAAGTTCGTCGACGGCTTCCGCAAGGGGCCATCGCCCAGGCCGCTCCCC
ACGCAGGTCGTCAAGAGTTTCTTATACCAGTTGTGCAAAGGAACTGCGCATTGCCACGGC
CATGGCGTCCTTCACCGGGATTTAAAGCCACAAAACTTGTTGATCGACAAGGAGAAAGGG
GTACTGAAAATTGCAGATCTTGGGCTAAGCAGAGCTTTTACAGTTCCCAT

Homology of Contig U35_11267 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g67160.1	304	2e-99	protein\|cyclin-dependent kinase B1-1, putative, expressed
Brachypodium v1_2	Bradi4g25980.1	306	3e-99
Arabidopsis v10	AT2G38620.2	311	2e-83	\| Symbols: CDKB1;2 \| cyclin-dependent kinase B1;2 \| chr2:16152551-16153866 FORWARD LENGTH=311