barSeed - Barley Seed Development Database

Probe CUST_40418_PI390587928

Source Contig U35_23247

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40418_PI390587928	Hv_44K_v2	CTGGATCATGTGTTTGAATTGAATTGCCAGTTTTATGTGCGGACATAGAGATAAAGATCT	575	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.538	1.723	1.367	0.753	0.345	0.293
Raw	33.490	59.158	40.141	34.483	4.709	3.875

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_23627.1	768	2e-24	164 - 223	100	60 / 60	minus	ABC17604
JLOC1	JLOC1_16315.1	1413	8e-25	637 - 696	100	60 / 60	minus
Harvest21	ABC17604	666	3e-25	576 - 635	100	60 / 60	plus	ABC17604
Harvest35	U35_23247	666	3e-25	576 - 635	100	60 / 60	plus

Contig Sequence (666 bp)

>U35_23247 666 Hv_44K_v2
GCAGCTCTTCAAGTAGATGGAGTATGGTGGCGTTGTTCCAGACCATGTTGCCTTTGTAGG
CGTGCTTACTGCTGCAGTCATGCAGGGATGGTGGATGAAGGCAGGAAATATTTTGACTCC
ATGCTGACTCTTTACGGCATCAGACCAACGGCAAAACATTATGGATGTATGATTGATCTC
TTGAGCCGTGCAGGTCACTTAGGAGAGGTTGAGAGGATGATGCAATTGATGCCTATTCAG
CCCAGTGTTAGCATGTGGGGAAGTATGATGAAAGGTTGCAAGATATATGATAGGGCTGAT
GTAGCTGAGAGGATAGGAAGGGGTTTTGCTGAACTTAACCTTTAGTTAAGTGCAACCTAT
GTAGTCATGTCCAACATATATGCAGAGGTTGGTAGGTGGCATGCTGTCGAGTAAACTAGG
AGGTTGATGTGGCAGATGGGATTGAAGAAAAATATAGGCTCAAGTGGCACTGAAGTGCAC
GTGTTGTGCACCTGAATTCAATCAAAGTGAGAGGGGAAGAATATTGTGAAAGGAGTGTTG
TGGAAATGTGACATCAAAGGCGTGTACATTCCTGTCTGGATCATGTGTTTGAATTGAATT
GCCAGTTTTATGTGCGGACATAGAGATAAAGATCTAACTTAAAGTGCTTAAAAAAAAAAA
AAAAAA

Homology of Contig U35_23247 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g40020.1	513	1e-69	protein\|selenium binding protein, putative, expressed
Brachypodium v1_2	None
Arabidopsis v10	None