- Probe CUST_40405_PI390587928
- Source Contig U35_47200
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_40405_PI390587928 | Hv_44K_v2 | TCAACTCCAAGTAATTGATTTTCCAGGCTGGCTGCAGTAAATTGTTTTGCATGTGCCAAA | 14 | GeneList: green MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.127 | 1.397 | 1.641 | 1.200 | 0.563 | 0.458 |
| Raw | 16.586 | 33.586 | 33.261 | 41.191 | 5.672 | 4.735 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_65279.21 | 4859 | 3e-22 | 2262 - 2317 | 100 | 56 / 56 | minus | None |
| MLOC | MLOC_65279.6 | 4273 | 3e-22 | 3887 - 3942 | 100 | 56 / 56 | minus | None |
| MLOC | MLOC_65279.2 | 2731 | 3e-22 | 1287 - 1342 | 100 | 56 / 56 | minus | None |
| MLOC | MLOC_65279.3 | 5604 | 3e-22 | 4162 - 4217 | 100 | 56 / 56 | minus | None |
| MLOC | MLOC_65279.4 | 3314 | 3e-22 | 1872 - 1927 | 100 | 56 / 56 | minus | None |
| MLOC | MLOC_65279.5 | 2500 | 3e-22 | 1058 - 1113 | 100 | 56 / 56 | minus | None |
| MLOC | MLOC_65279.18 | 2200 | 3e-22 | 801 - 856 | 100 | 56 / 56 | minus | None |
| MLOC | MLOC_65279.19 | 5087 | 3e-22 | 3688 - 3743 | 100 | 56 / 56 | minus | None |
| MLOC | MLOC_65279.10 | 2870 | 3e-22 | 1312 - 1367 | 100 | 56 / 56 | minus | None |
| MLOC | MLOC_65279.20 | 1935 | 3e-22 | 658 - 713 | 100 | 56 / 56 | minus | None |
| MLOC | MLOC_65279.22 | 1400 | 3e-22 | 117 - 172 | 100 | 56 / 56 | minus | None |
| MLOC | MLOC_65279.16 | 4895 | 3e-22 | 3612 - 3667 | 100 | 56 / 56 | minus | None |
| MLOC | MLOC_65279.7 | 2348 | 3e-22 | 1003 - 1058 | 100 | 56 / 56 | minus | None |
| MLOC | MLOC_65279.17 | 4666 | 3e-22 | 3383 - 3438 | 100 | 56 / 56 | minus | None |
| JLOC1 | JLOC1_42949.8 | 1472 | 1e-22 | 1232 - 1287 | 100 | 56 / 56 | plus | |
| JLOC1 | JLOC1_42949.7 | 3548 | 1e-22 | 1232 - 1287 | 100 | 56 / 56 | plus | |
| JLOC1 | JLOC1_42949.5 | 5212 | 1e-22 | 1232 - 1287 | 100 | 56 / 56 | plus | |
| JLOC1 | JLOC1_42949.4 | 3674 | 1e-22 | 1232 - 1287 | 100 | 56 / 56 | plus | |
| JLOC1 | JLOC1_42949.3 | 5441 | 1e-22 | 1232 - 1287 | 100 | 56 / 56 | plus | |
| Harvest35 | U35_47200 | 653 | 3e-25 | 15 - 74 | 100 | 60 / 60 | minus |
Contig Sequence (653 bp)
>U35_47200 653 Hv_44K_v2 TTTTTTTTTTTTTTTTTGGCACATGCAAAACAATTTACTGCAGCCAGCCTGGAAAATCAA TTACTTGGAGTTGAAGTGCACATTGCAAATCGCATGTATTGTCTTGAACTACCGCCACTA CTGAACCATTAAATGAGGTTGTTGAACATGGAAAGCGTAAAGACATTGAATCCTTTCGGC AACCTCACAGCTATCATGTTGCTCTATTCCATCTCTTCTGCAATTACATTTCCGTTCTGT GGAAACTGCTTCATCAAACTGCTTATCTATTTCTGCAAGGTATATTTCAAACAAGGTCGA CCGTGGAGGAATTGCTGCAGCGGTAAAAACTGGAGGTAAAAGCCATAATATGTGCGGTTT ATTTTCTAATGACTGCCTTGCATACTCAAAAATGTCATTTTCCTTCAAATTAAAAATCTT GTCTGGGCATTCACCCCGATAAGTTCCCGGAAGCAACTGGTGCAGATCAGCATACTGCTT CGATATAGGAAGGGAACTAAAAGCATGCGACACGAAGCTCTCTATCAATGGGTCCCATCG CCTTGAAACCAAACCCAGCAAGCATATCTCCATGACTTCAACGAGGCCACTCTGAGAAGA ATCTACAGAAACTTCTGATGGTTCAAACACCTTCATCCACTGCTCCTTGGGGG
Homology of Contig U35_47200 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os02g56950.2 | 386 | 4e-87 | protein|expressed protein |
| Brachypodium v1_2 | Bradi3g55130.1 | 456 | 1e-87 | |
| Arabidopsis v10 | None |