barSeed - Barley Seed Development Database

Probe CUST_4039_PI390587928

Source Contig U35_37339

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4039_PI390587928	Hv_44K_v2	AGAAAGGAGTTAGATATGGGTGCCCACTGGAGGATGTTATTACAGGATTGCAAATCCAAT	415	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.185	1.602	1.475	1.135	0.490	0.484
Raw	23.880	50.032	39.091	44.243	6.534	7.573

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251112.1	2462	7e-23	1398 - 1457	98	59 / 60	plus	ABC18520
MLOC	MLOC_26501.1	1161	7e-23	965 - 1024	98	59 / 60	minus	ABC18520
Harvest35	U35_37339	623	3e-25	416 - 475	100	60 / 60	plus

Contig Sequence (623 bp)

>U35_37339 623 Hv_44K_v2
GTGATAAGCAACAGCCCAGTCATTCTGAATGTTGATTGTGATATGTACTCCAACAACTCA
GAGTCCGTCAGAGATGCATTATGCTTCTTCCTAGATGAAGAGCAAGGTCAAGATATCGGT
TTTGTGCAGTACCCTCAGAACTTTGACAATGTGGTGCACAATGACATCTATGGAAATCCC
ATCAACGTTGTCAACGAGTTGGATAACCCTTGCTTGGATGGATGGGGTGGAATGTGTTAC
TATGGTACTGGATGCTTCCATCGCAGAGAGGCCCTCTCTGGACAAATATATAGTAAAGAT
TACAAGGAAGATTGGGCTAAAGGAGTGGGGATAGCAGAAAATGCAGATGAACTGGAAGAA
ACATCAAAGTCATTGGTGACATGCACGTATGAGCATAACACCCCGTGGGGCATTGAGAAA
GGAGTTAGATATGGGTGCCCACTGGAGGATGTTATTACAGGATTGCAAATCCAATGCCGC
GGGTGGAGATCGGTATACTACAACCCGTCCAGAAAGGGCTTCTTAGGCAAGGCGCCTACC
TCACTAGGCCAGATCCTGGTTCAGCACAAGAGATGGTCAGAAGGGTTCCTCCAAATATCC
CTCTCCAATTACAGCCCCTTTTT

Homology of Contig U35_37339 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g49332.2	529	9e-134	protein\|CSLE2 - cellulose synthase-like family E, expressed
Brachypodium v1_2	Bradi3g56440.1	738	1e-132
Arabidopsis v10	AT1G55850.1	729	3e-74	\| Symbols: ATCSLE1, CSLE1 \| cellulose synthase like E1 \| chr1:20876752-20879414 FORWARD LENGTH=729