barSeed - Barley Seed Development Database

Probe CUST_40397_PI390587928

Source Contig U35_47205

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40397_PI390587928	Hv_44K_v2	TGTACTCCTGCAGATCCAAAACTATGAATTATTGCTAATGACGATGGTGTTTTGTCCTTC	24	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_50828.1	413	2e-24	46 - 105	100	60 / 60	minus	ABC00030
MLOC	AK355359	687	2e-23	630 - 687	100	58 / 58	plus	ABC00009 ABC00020 ABC00026 ABC00030 ABC00035 ABC00037 ABC00059 ABC00117 ABC00122 ABC00131 ABC00139 ABC00140 ABC00142 ABC00153 ABC00159 ABC00160 ABC00163 ABC00172 ABC00173 ABC00174 ABC00175 ABC00180 ABC00197 ABC00202 ABC00203 ABC00234 ABC00250 ABC00316 ABC00434 ABC00488 ABC00499 ABC00500 ABC00576 ABC00659 ABC00665 ABC00695 ABC00700 ABC00724 ABC00877 ABC00980 ABC27134 ABC27412 ABC29158 ABC29958 ABC30671 ABC32179 ABC43349
JLOC1	JLOC1_32412.1	451	8e-25	84 - 143	100	60 / 60	minus
Harvest35	U35_47205	664	3e-25	25 - 84	100	60 / 60	minus

Contig Sequence (664 bp)

>U35_47205 664 Hv_44K_v2
TTTTTTTTTTTTTTTTTAAATGCAGAAGGACAAAACACCATCGTCATTAGCAATAATTCA
TAGTTTTGGATCTGCAGGAGTACAATTTTTGTCAACTCTGGATTCATATAACTCGGCAAA
CACAGTATTTGCCCATCAGAAATTCAGAACACGTAAGCAAACATTAAACAGCCAACTCTA
CGGCCGCTACTACAACGCATATTACTACTAAGCATAGAAGGCATAGAATCCAGATCTACT
ACAGCTTTCTCCTCTCAAGCAATTTCTTGACCGCGAGCCATGGCATGTGCGCCACGGCCG
GCCAGCCAGCACCGGCGCCGCGGCTCTTCAGCCGCCGAAGCCGTAGAGGGTGCGGCCCTG
GCGCTTGAGCGCGTACACGACGTCCATGGCGGTGACGGTCTTGCGGCGGGCGTGCTCGGT
GTAGGTGACGGCGTCGCGGATGACGTTCTCGAGGAAGATCTTGAGCACGCCGCGGGTCTC
CTCGTAGATGAGCCCCGAGATGCGCTTCACGCCGCCCCTCCGGGCCAGCCTCCGGATCGC
CGGCTTGGTGATGCCCTGGATGTTGTCGCGCAGGACCTTGCGGTGGCGCTTCGCGCCGCC
CTTGGCGAGCCCCTTGCCGNCCTTGCCGCGACCCGACATGGCTGCTGCTTGGAAGAGAGG
GGGG

Homology of Contig U35_47205 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None