barSeed - Barley Seed Development Database

Probe CUST_40395_PI390587928

Source Contig U35_11278

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40395_PI390587928	Hv_44K_v2	CAAGTACAATTTCTTGATTAGGTTTGGCGAAGAATTCTTCGAGCCGTCTGGTTCGATCAA	476	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.909	1.792	1.899	0.935	0.313	0.293
Raw	2509.320	7453.123	6947.287	5230.713	627.941	641.409

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_11278	551	3e-25	477 - 536	100	60 / 60	plus

Contig Sequence (551 bp)

>U35_11278 551 Hv_44K_v2
CTCCTGCTGTCACGCCCATCGCGTTCCTCGCGTGGTTCCCCTTCGTGTCCGAGTTCCAGA
CCAGGATGCTCTTCAACCAGGCTTTCAGCAGAGGCCTGCAGATCTCCCGTATCCTCGGCG
GCCACAAGAAGGACCGAGCCACCCGGAACAAGGAGTAGGTAGAAGATCCAGGGCTAGCTC
CTGCGGACTTTGTCCATTCATCCTAGTGTTATCGGTGTCACTCGCCCCCGACTCTTCTAG
ATTCTGCTGCCACGGTTGTTCCCCAATGCGATTCGAGTCTGACTGTTCATCCATAGATCG
GATGGCTGTGCCTTAGGCTACTTATTAGTAGTGTTCTCCGGTGTAGGTGTAGGTGTAGAT
TCAGAACTGTTGCAACTGCGCTTTATGTACAGATCTGCTGCTCCTTAGCGTGGCTGCTGG
ACCTTATGTAGACCTGTAGCGATGTGGGGAAGGGTTCTCTGATGCAACATATGCAGCAAG
TACAATTTCTTGATTAGGTTTGGCGAAGAATTCTTCGAGCCGTCTGGTTCGATCAANAAA
AAAAAAAAAAA

Homology of Contig U35_11278 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None