barSeed - Barley Seed Development Database

Probe CUST_40391_PI390587928

Source Contig U35_47209

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40391_PI390587928	Hv_44K_v2	GCAATTGCTGCTCTTGTCAAAGATTGGATGAAAGAACGAGTGGACAAACTTAAAGGATGG	547	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51494.2	3262	2e-24	1465 - 1524	100	60 / 60	minus	None
MLOC	MLOC_51494.3	2795	2e-24	1458 - 1517	100	60 / 60	minus	None
MLOC	MLOC_51494.1	3348	2e-24	1485 - 1544	100	60 / 60	minus	None
JLOC1	JLOC1_32900.1	3208	8e-25	1668 - 1727	100	60 / 60	plus
Harvest21	ABC48038	610	3e-25	548 - 607	100	60 / 60	plus
Harvest35	U35_47209	610	3e-25	548 - 607	100	60 / 60	plus

Contig Sequence (610 bp)

>U35_47209 610 Hv_44K_v2
GGAAACTTTACATGCTAGCAATATTGTTTCGATGCAAGGTATTGTCGCAATAGGAATCTC
AGCTGCGAAGATTCTTCTTGAAGATATATCTCAAAAATACCCCGGTAAAAGGAAAAAAGA
GACTGATGTGGTGCGTGGCAAGATTGAAACCTATATACGGTCCTCGCTCCGTACTGCTTT
TGCTCAAAGAATGGATGAGGCAGACTCAAAGCGATCATCAAGGAATCCCGTGCCAGTTCT
TGCAATCCTCGCAAAGGATATTAGTGACCTTGCTTCGAAGGAGAAAAATATCTACAGTCC
AATACTGAAGAAATGGCACCCACTTGCTTCAGGTGTTGCAGTTACGACCCTTCATTCTTG
CTTTGGTAATGAGCTGAAGCAATTTACGGTTGGGCGTACAAAGTTCACACCAGACACGGC
TCAAGTGCTTGATGCTGCTGATAAGTTAGAGAAGAATCTGATTAATATTGCAGTTGAAGA
CTTTCTGGATAGTGATGACGGAGGCAAGTCATTGATTAGACAGATGCCACCGTATGAAGC
TGAAAATGCAATTGCTGCTCTTGTCAAAGATTGGATGAAAGAACGAGTGGACAAACTTAA
AGGATGGGTT

Homology of Contig U35_47209 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g17760.1	986	2e-103	protein\|expressed protein
Brachypodium v1_2	Bradi4g28430.1	977	4e-103
Arabidopsis v10	AT2G25800.1	987	2e-84	Protein of unknown function (DUF810) \| chr2:11006138-11009728 REVERSE LENGTH=987