- Probe CUST_40374_PI390587928
- Source Contig U35_47210
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_40374_PI390587928 | Hv_44K_v2 | GCAGGTAAGGATGATGTGAAGACTAACTATTATCTATCCTTTTGATTGACAATCAACTAG | 30 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.561 | 1.752 | 1.109 | 0.786 | 0.337 | 0.395 |
| Raw | 980.984 | 1712.848 | 962.469 | 1057.176 | 159.814 | 205.656 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_7216.1 | 1535 | 9e-22 | 1 - 55 | 100 | 55 / 55 | minus | None |
| JLOC1 | JLOC1_4758.2 | 2051 | 8e-25 | 1866 - 1925 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_4758.1 | 1733 | 8e-25 | 1548 - 1607 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_47210 | 346 | 3e-25 | 31 - 90 | 100 | 60 / 60 | minus |
Contig Sequence (346 bp)
>U35_47210 346 Hv_44K_v2 TTTTTTTTTTTTTTTTTAGTCAAACTCAAACTAGTTGATTGTCAATCAAAAGGATAGATA ATAGTTAGTCTTCACATCATCCTTACCTGCTCTGCCCCCCACTACTTAACTATTCACACC CAAATACTAACTGCTGATAAATATACTCAACTGAATTACTAACTTAGTACTCCTACTAGT TTGCAACCACTCCGATTGTGGATAATAATAATAATAAAGCTATGCAATCAGCTAGTCCAC TATCCGCTCCACGCCTACTAAACCCAGCTACCTAGCTATATTTACATCCCTAAAGCAGCG GCCAGCTTCCAAGTGGTAGTTGTGGATGATCACGAGAGGAGAGGAC
Homology of Contig U35_47210 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |