barSeed - Barley Seed Development Database

Probe CUST_40373_PI390587928

Source Contig U35_47211

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40373_PI390587928	Hv_44K_v2	AAATTATTCTTGGAGAGATGTCAGATAGTGGCATTTACTCAGCTGCTGAACTTGTGTAAA	65	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.115	1.371	1.200	1.029	0.474	0.439
Raw	141.895	277.645	209.160	271.037	46.527	45.555

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_3499.1	1973	2e-24	1361 - 1420	100	60 / 60	plus	None
JLOC1	JLOC1_2100.1	1403	8e-25	1223 - 1282	100	60 / 60	plus
Harvest35	U35_47211	735	3e-25	66 - 125	100	60 / 60	minus

Contig Sequence (735 bp)

>U35_47211 735 Hv_44K_v2
TTTTTTTTTTTTTTTTTACAGTGATCATGATTTTTCATTAGAGGTCAAGGTTCTCTTGCG
ATTTTTTTACACAAGTTCAGCAGCTGAGTAAATGCCACTATCTGACATCTCTCCAAGAAT
AATTTAAGCACCGAAAACCTTTTCAATCTATTTTATTCTAATTTGGCCATAAAAACAAAA
TTAATGGAACAGTGTCAACAACAGCCTTACAGTTACATGTGGTGCATTTACAGCAAAACT
TTTCGTCTTATCTTCCAGTCTTCCCATGAGACAATATGTCTTGGAAGGCCTTCACATCAT
CAACTGAATAGGAGGGTTTTCTCTCGGCAACCAACCTCATTATCTCTCGGGCGTTCCTGT
CCTTTTTAATTACCATAAGGCCTTTCAGCAGATGGTGAATGGTATCGACACTCGGAAACC
AGTTCTTCTCCATGCTGTCTTTACACAATCTGAATGCCAAATTAAACTCCCTTCGCTTAC
ATAGGTAATGCACCATTGTCTGGTAAATCCTTTCATTTGGCTTGCATCCCCTCCCATGCA
TAGCACCAAAGACCGTCTTGGCCATCTCATGCTCACCCATCACAAAAAATCCCTTAATAA
CCAAGTTATATGTGATCTCATCTGGTGTGATCCCCGCTGCATACATTTTCCGCACCAGAT
CATTTGCCAGCCAGCCCCTTCTCCTGTTGATGAGGAACTGAATCCTTACATTGTAACTGG
TTAGTGTGGGCATGC

Homology of Contig U35_47211 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g39050.1	444	1e-92	protein\|pentatricopeptide, putative, expressed
Brachypodium v1_2	Bradi3g39320.1	449	3e-96
Arabidopsis v10	None