barSeed - Barley Seed Development Database

Probe CUST_40360_PI390587928

Source Contig U35_17836

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40360_PI390587928	Hv_44K_v2	CGATAGATGTCTGTGCTAGTAAGTTGGGCAAGGCTGCAAGATATCTCTTTTGAAAAATGT	1633	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.161	2.271	1.195	0.733	0.239	0.215
Raw	4159.397	6883.950	3148.213	3018.091	352.969	339.332

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74152.1	1038	2e-24	545 - 604	100	60 / 60	minus	ABC05765
JLOC1	JLOC1_49398.2	1114	8e-25	967 - 1026	100	60 / 60	plus
Harvest21	ABC05765	1721	3e-25	1634 - 1693	100	60 / 60	plus	ABC05765
Harvest35	U35_17836	1721	3e-25	1634 - 1693	100	60 / 60	plus

Contig Sequence (1721 bp)

>U35_17836 1721 Hv_44K_v2
AGAGTCTCTCCCCTCTCCCCCGTCACGCTCCCCACCCCACCCCAACCCCCCTCACCCTCC
CGCCATTTCCCCCCTCGCCCCGCCCCCAAAACCCCCGCCCAAAGCCAAACCCTAACCCTA
GCGGGGAGAACGGCGATGCCGAAGGCCGGCGGCGGGGACGAGGAGGAGTTCCGCGCCGAG
GTGGAGGAGCGGCTGATCAACGAGGAGTACAAGATCTGGAAGAAGAACACGCCCTTCCTC
TACGACCTCGTCATCACCCACGCGCTCGAATGGCCCTCGCTCACCGTCCAGTGGCTGCCC
GACCGCACCGAGCCCGCCGGCAAGGACCACTCCGTGCAGAAGATGGTGCTCGGGACCCAC
ACCTCCGACAACGAGCCCAACTACCTCATGCTCGCCCAGGTCCAGCTCCCCCTCGACGAC
GCCGAGGCCGACGCGCGCCACTACGACGACGACCACGCCGACATCGGCGGCTTCGGGGCC
GCATCCGGCAAGGTGCAAATAGTTCAACAGATAAATCATGATGGAGAAGTTAATCGAGCT
CGATATATGCCCCAAAATTCATTTATTATCGCTACCAAGACAGTCAGTGCAGAAGTGTAT
GTCTTTGATTATAGCAAGCACCCATCAAAGCCTCCACTAGATGGCGCGTGCAATCCTGAC
TTAAGGCTGAAGGGACACAACTCTGAAGGATATGGCCTGTCTTGGAGTGTCTTTAAAGAG
GGTCATTTGCTGAGCGGATCAGATGATGCTCAAATTTGCTTATGGGATATCACAGCAAAT
GGTAAAAATAAAACTCTTGACGCATACCAGATTTTTAAGTTTCATGATGGCGTCGTTGAA
GATGTTGCTTGGCATTTGAGGCATGAATACTTATTCGGCTCAGTCGGTGATGATCATCAT
CTCCTGATTTGGGATTTGCGCACTCCTGCACCTACCAAGCCTGTACAGTCTGTGGTGGCA
CACCAGGGTGAGGTGAATTGCCTGGCTTTCAATCCTTTCAATGAATGGGTTGTTGCAACT
GGTTCAACCGACAAGACTGTGAAATTATTTGATCTTCGGAAGATTGATACTTCGCTGCAC
ACTTTTGACTGTCATAAAGAGGAAGTATTTCAAGTTGGATGGAGCCCGAAGAATGAAACT
ATACTTGCATCTTGTTGCCTGGGAAGGAGGCTGATGGTTTGGGATCTAAGCAGAATTGAC
CAGGAGCAAACACCAGAGGATGCGGAGGACGGCCCTCCTGAGCTCTTATTCATTCATGGA
GGCCACACGAGCAAAATCTCCGACTTCTCCTGGAACCCGTGCGAGGACTGGGTGCTTGCC
AGCGTTGCTGAAGACAACATCCTTCAGATATGGCAGATGGCAGAGAACATCTACCATGAT
GAGGATGATCTTCCCAGCGATGAGCCGGCAAAGGCTTCGTGAAACCCTTAATGGTAGGAC
ACCAGAATGGAGACAAGATAATACCTAGCTTTGTCGATTTTAGGTAACCTTATGTGATTG
AACATGTTGTCTTGGTTGGCTTTGTATGTGCGTTGTACTTGGCATTTTCAGCATATACAT
ACCAATTAGACTATCTGTCGTTGTAGTTGATGCATTTACCTGTTTCCCCATATCACGAGT
CCTGGGATTATACCGATAGATGTCTGTGCTAGTAAGTTGGGCAAGGCTGCAAGATATCTC
TTTTGAAAAATGTTTTTTGAATTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_17836 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g43890.1	429	protein\|WD domain, G-beta repeat domain containing protein, expressed
Brachypodium v1_2	Bradi1g13930.1	430
Arabidopsis v10	AT5G58230.1	424	\| Symbols: MSI1, MEE70, ATMSI1 \| Transducin/WD40 repeat-like superfamily protein \| chr5:23556112-23557994 FORWARD LENGTH=424