barSeed - Barley Seed Development Database

Probe CUST_4035_PI390587928

Source Contig U35_49311

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4035_PI390587928	Hv_44K_v2	TGGTAGCAAACAAAGGATCATAAGTACCTTACACCATCAATTGTTTCACTGCCCAAAAAA	11	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57353.2	1831	3e-21	1751 - 1807	98	56 / 57	plus	ABC51588
MLOC	MLOC_57353.3	1828	3e-21	1748 - 1804	98	56 / 57	plus	ABC51588
MLOC	MLOC_57353.1	1880	3e-21	1747 - 1803	98	56 / 57	plus	ABC51588
JLOC1	JLOC1_37156.1	1975	2e-21	1755 - 1811	98	56 / 57	plus
Harvest35	U35_49311	309	3e-25	12 - 71	100	60 / 60	minus

Contig Sequence (309 bp)

>U35_49311 309 Hv_44K_v2
TTTTTTTTTTTTTTTTTGGGCAGTGAAACAATTGATGGTGTAAGGTACTTATGATCCTTT
GTTTGCTACCAACAAAATCATTTTAAGAAGTGTAGAGGACTCTTATCTACAGCTGACCGC
ACGACAAGTGCAGTTGGCCATCTCAAACAAACATAAAAAGGAGGACTTTATACAATTGGA
TATAGCTGCCGTTGCTACGTTGAGCTCTTCTCGTTCTTCGTGGTTCGGAGCAGTTCTTTC
GCCATTGATGAGAAGGATTGAGCGCCATGAGCCATATCTGCGGACCGAAGATTAATGCCC
TCCAATTTT

Homology of Contig U35_49311 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None