barSeed - Barley Seed Development Database

Probe CUST_40358_PI390587928

Source Contig U35_17838

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40358_PI390587928	Hv_44K_v2	ATATATCCTGCCCTTTTTAGTAAATCTGAATATCGGCTTTCTGCCCTTTTCTGCAAAAAA	1577	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.642	1.857	1.224	0.808	0.306	0.275
Raw	102.348	194.661	105.601	114.693	14.907	14.295

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC07725	1646	3e-25	1576 - 1635	100	60 / 60	plus	ABC07725
Harvest35	U35_17838	1648	3e-25	1578 - 1637	100	60 / 60	plus

Contig Sequence (1648 bp)

>U35_17838 1648 Hv_44K_v2
AGAGGAGAGGACGACTCGGCCGACCCGACCGGCCCTCGCGCGCTCCGCCTTCCCCGCCTC
GCCGTCGACGAGGGAATAGCAAAACAGAATTATGAGCTCAGGGAGTGGTGCAGTTAATGG
CCATGCGAAAGAAGCAGCATTATATGAGCAGCAGCTGTCAAAGATTGGTGAAGTTAGAGC
TGCTCTAGGACAACTATCTGGAAAATCTGCACTGTATTGCTCAGATGGTTCAATTGCGAG
GTACCTGATAGCAAGGAACTGGGATGTGAGGAAGGCTACCAAAATGCTTACAAAAACCTT
GAAATGGCGTTCAGAGTATAAGCCAGATGAGATACATTGGGATGAGATATCGGGTGAAGC
CATGACTGGAAAAATTTACCGAAGTGATCATTTTGACAAGAGTGGACGGAGTATTCTTGT
CATGAGACCTGGATGCCAGAATACCAAGAAGTCCAAAGGACAGATCAGGTATTTGGTATA
CTGTATGGAGAATGCAATTCTAAATCTTCCAGCTGGACAGGATCAGATGGTTTGGCTCAT
TGATTTTGCTGGCTTCAGCTTGCCTAATGTATCACTTCTAGTGACAAAGTTAACAGCGGA
TGTCCTACAAGGTCATTATCCTGAAAGATTGGGTGTGGCAATTCTTTATAACGCTCCCAA
GTTTTTTGAGTCTTTCTGGAAGATGGCAAGTCCCCTTCTTGAGCCAAAGACGAAAAATAA
GGTCAAATTTGTATACTCAGATAGACCTGAAACTGACAAGATAATGGAAGACCTTTTCAA
TATGGACGAGTTAGAATGCGCATTTGGCGGTAGAAACCCGGCCACTTTTAACATAAATGA
TTATGCTGCAAGGATGAGAGAAGATGATAAAAAGATGCCATTATTCTGGAGCCCCGAGAA
TTCGGCTCTTGCCACTGAGCCATATCGCATGAAGAACCACGGGTCTCAACAAGGTGACTC
GGGTTTGAAGACTGAAGAGACTGCATCTGACATGATTGGGGAAACAGAGGCCGCATCTGA
AAAGAGTGGAGAAACAGACACTGGATCGGAGAAGGAAGATACCGAGGCTGCATCTGAGGA
GAGGGAAGAGACCGAGACTTCATCGGAGAAGATGGTAGAAACTGCGACTGAATCTGTAAA
GAAGGAAGAAACTGATACTGTTTCTGAAAAGAAAGGAGAAACAGAGACTGAGTCTGAAAA
GAAAGAAGAAACAGAGACCGAATGAAGCACCGTAAAATCGACAAGCTCGCGAGGGGAAGG
TAGTGCATCAGCAGAGAAAAGTGGCAGTTCATCTGATCCGTGAAGTTATCAGGATGAAAA
GTACGTCTCAGATGTTGATATGAGCTCCCACCACAGTGAATTCCCACCAACAGATGAACA
TTAAAAGTGATAACAACCCTTTTAACACACAACAAAGGGGAAGCTGCCTGACTTATTTTG
TAGTCGGTGCCCTTGTCACCTTGTTCGAAGGACCTTTTGGCGACAAATGAACGTATCAAA
CGGTAACGATGATAAAGTACTTTGCTACCCAGGGTTTTTGTACGCCTGTTGCTCCTTGGA
ATCTATTGGAATGTATGATATATCCTGCCCTTTTTAGTAAATCTGAATATCGGCTTTCTG
CCCTTTTCTGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_17838 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g51610.1	379	0.0	protein\|CRAL/TRIO domain containing protein, expressed
Brachypodium v1_2	Bradi3g59030.1	404	0.0
Arabidopsis v10	AT1G22180.2	314	4e-109	Sec14p-like phosphatidylinositol transfer family protein \| chr1:7828434-7829745 REVERSE LENGTH=314