barSeed - Barley Seed Development Database

Probe CUST_40354_PI390587928

Source Contig U35_29812

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40354_PI390587928	Hv_44K_v2	TTGAGGGCTTTCAGGGGATCTACGTACGTGTTTGCAAACAAGATGTGGGTGTGTATATAG	179	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51368.1	2980	2e-24	2716 - 2775	100	60 / 60	plus	ABC19828 ABC29291
MLOC	MLOC_51368.2	3066	2e-24	2711 - 2770	100	60 / 60	plus	ABC19828 ABC29291
JLOC1	JLOC1_32812.1	2221	8e-25	1873 - 1932	100	60 / 60	plus
Harvest21	ABC29291	317	3e-25	180 - 239	100	60 / 60	plus	ABC29291
Harvest35	U35_29812	317	3e-25	180 - 239	100	60 / 60	plus

Contig Sequence (317 bp)

>U35_29812 317 Hv_44K_v2
TCAGCCCAAAAAGAAGCAGCCATGAAGATGATGTGAGCATGCCAACAGCAGGCAGGAGAG
CATGACTGTCTAACAATTAAACAAGGTTAAACAAGGTTGTGATGAAGAGCGCAAGCAGCA
TGAGCCAGGACACCAGGCCAAGGAGAGTGTTCCTCCTCATGCCTCCTTATGCTTCACGGT
TGAGGGCTTTCAGGGGATCTACGTACGTGTTTGCAAACAAGATGTGGGTGTGTATATAGG
CGACCGTGTATGGCCTGACTCGACTTGTGATAAGATCCGGCCCAGCCGCTTTGCTTGACT
AAAAAAAAAAAAAAAAA

Homology of Contig U35_29812 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None