- Probe CUST_40350_PI390587928
- Source Contig U35_29816
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_40350_PI390587928 | Hv_44K_v2 | TTCGTCAAACAATGAGCTTGTGAGGACTCAGACCCTTGTGAAGAATGCCATTGTGCAAGA | 304 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK251391.1 | 1440 | 6e-24 | 785 - 843 | 100 | 59 / 59 | plus | ABC01024 ABC04901 ABC04902 |
| MLOC | AK358692 | 992 | 6e-24 | 332 - 390 | 100 | 59 / 59 | plus | ABC01024 ABC49887 |
| JLOC1 | JLOC1_41719.1 | 1340 | 3e-24 | 462 - 520 | 100 | 59 / 59 | plus | |
| Harvest21 | ABC29302 | 469 | 3e-25 | 305 - 364 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC52387 | 714 | 1e-24 | 300 - 358 | 100 | 59 / 59 | plus | |
| Harvest21 | ABC01024 | 1138 | 1e-24 | 491 - 549 | 100 | 59 / 59 | plus | ABC01024 |
| Harvest21 | ABC29275 | 405 | 5e-23 | 304 - 362 | 98 | 58 / 59 | plus | |
| Harvest35 | U35_29816 | 469 | 3e-25 | 305 - 364 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14504 | 1033 | 1e-24 | 330 - 388 | 100 | 59 / 59 | plus | |
| Harvest35 | U35_14503 | 850 | 1e-24 | 300 - 358 | 100 | 59 / 59 | plus | |
| Harvest35 | U35_29802 | 405 | 5e-23 | 304 - 362 | 98 | 58 / 59 | plus |
Contig Sequence (469 bp)
>U35_29816 469 Hv_44K_v2 CGCGGGCATAGGAGGCGAAGCAGCAGCGGAGCCAAGCAACCGACGCCACCATGGGTATCT CGCGTGACTCCATGCACAAGCGCCGGGCCACCGGTGGGAAGCAGAAGGCATGGAGGAAGA AGCGAAAGTATGAGCTGGGCCGCCAGGCTGCCAACACTAAGCTTTCGAGCAACAAAACAG TGAGGAGGGTCCGTGTTCGTGGAGGTAATGTGAAATGGAGGGCTCTCCGTCTGGACACTG GTAACTTCTCATGGGGTAGTGAGGCCACAACCCGCAAGACCCGTCTCCTGGATGTGGTTT ACAATTCGTCAAACAATGAGCTTGTGAGGACTCAGACCCTTGTGAAGAATGCCATTGTGC AAGAGGCTGAGGTTGCTGCTGCTGCCACAGAGGAAGCAAAGAAGAGCAACAAAGTCCAGA GGAAGCTTGAGAAGCGTCAGCAGGGGCGCACTCTGGACTCACACATTGA
Homology of Contig U35_29816 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os04g28180.1 | 222 | 3e-60 | protein|ribosomal protein, putative, expressed |
| Brachypodium v1_2 | Bradi3g43560.2 | 227 | 6e-63 | |
| Arabidopsis v10 | AT5G59240.1 | 210 | 6e-61 | Ribosomal protein S8e family protein | chr5:23902626-23903670 REVERSE LENGTH=210 |