barSeed - Barley Seed Development Database

Probe CUST_4034_PI390587928

Source Contig U35_13383

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4034_PI390587928	Hv_44K_v2	CTGATAGAATGGATGTTAGTATCTGTACTTGCATAAGCATGCAGCTTTTATTGTAGGATA	555	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.542	1.709	1.304	0.876	0.361	0.379
Raw	721.113	1268.265	830.684	877.366	125.255	144.376

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59510.1	1767	2e-24	65 - 124	100	60 / 60	minus	ABC25221
JLOC1	JLOC1_38730.1	1750	8e-25	47 - 106	100	60 / 60	minus
Harvest21	ABC25221	683	3e-25	69 - 128	100	60 / 60	minus	ABC25221
Harvest35	U35_13383	683	3e-25	556 - 615	100	60 / 60	plus

Contig Sequence (683 bp)

>U35_13383 683 Hv_44K_v2
GGCACGAGGCTTAGCAAGGGAGCCTGAGAAGGTGTTGGTCATTGGTGTATGTGGGAAGCC
AAGGCTCGGGGCAGTTCAGGGGAACGCGTTTGGTAATGCATTTAGGTCAGCGGCAGAGGA
GATCGGTGCAGATTATTTCCATGACATGTTTGAGTCATCATGGATTGTTCTTGATGTTGT
TGCTGTCAGTTCTTTCATGATTCGGTTAACAGAGAAGCTTTGATGCCATGTGCTCGCCCC
ACGCTGATGATTCTTTCATTCCCAAGATGGGAAATCCGAGGCTTGTGCTCTCTAAATAAA
GGAGGTTGACTAGTTGATGATGGTGGTGCATGCCATGTTGCTCACCTGATATTTTCACCA
AATTACAGATAGCAGCCTGACAAACATTGTAATTTGCAACATCTGAGTTGCTTGGCAATC
ATGTTTTTAGTGATAGAGGAGAGGCTGTTCCACTCTCCAACTGCCCCATTAGCAAAGGAT
AATCCATCAGATTCAGATGCCAACCTGATTCTGACCTACAAGGGGCAAGGTACACTTGCT
TACTGGTTTCTCTACCTGATAGAATGGATGTTAGTATCTGTACTTGCATAAGCATGCAGC
TTTTATTGTAGGATAATGTTGTATTCGTTTCTGTATCAATAAAGTTGTTTCAAGTTTTTA
GTGCGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_13383 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None