barSeed - Barley Seed Development Database

Probe CUST_4033_PI390587928

Source Contig U35_49312

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4033_PI390587928	Hv_44K_v2	GTTGTGGTTGAGAAACTTGTACGTTGCTTCATATTCCTCTTTTCCTTTAGCATCACACTT	68	GeneList: orangered4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.486	2.526	1.354	0.780	0.493	0.482
Raw	37.544	63.905	27.940	25.749	3.853	4.430

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10100.3	3182	2e-24	24 - 83	100	60 / 60	minus	None
MLOC	MLOC_10100.4	3431	2e-24	24 - 83	100	60 / 60	minus	None
MLOC	MLOC_10100.5	3202	2e-24	24 - 83	100	60 / 60	minus	None
MLOC	MLOC_10100.1	3385	2e-24	34 - 93	100	60 / 60	minus	None
MLOC	MLOC_10100.2	3440	2e-24	34 - 93	100	60 / 60	minus	None
Harvest35	U35_49312	420	3e-25	69 - 128	100	60 / 60	minus

Contig Sequence (420 bp)

>U35_49312 420 Hv_44K_v2
TTTTTTTTTTTTTTTTTGACCAAAGCTATATGATTTTTTTATCACGCATAATATACATGG
TATAAAGAAAGTGTGATGCTAAAGGAAAAGAGGAATATGAAGCAACGTACAAGTTTCTCA
ACCACAACTGCACAATTCTATCCAGAGCACGCCAAGTGCCTTCTCCCATGTTTTCTGCTA
CAAGTATTATAGCCTGCACCTCTTCCTCTTGAGCAGTACTCTGAAGATCAAGATCATCTT
TGATATGTTCATCCGCAAAAGTCCATGTAACGCGAAACCCTGGTAAACTGTAGGTTATCA
TATATATCTCTGAGATTGCCTAGATGCTACCTACCACTGTTCACTTGACACACAGACACC
AGTCTAGATCTGATCCTGGGTCTGTAATGGCATGCTGTATGTCAGATCTCATCAATCACG

Homology of Contig U35_49312 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None